Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29590 242 / 6e-76 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT5G39090 239 / 1e-74 HXXXD-type acyl-transferase family protein (.1) AT5G39050 223 / 2e-68 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT5G39080 223 / 3e-68 HXXXD-type acyl-transferase family protein (.1) AT3G29670 219 / 3e-67 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT3G29635 209 / 2e-63 HXXXD-type acyl-transferase family protein (.1) AT5G61160 203 / 5e-61 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29680 189 / 2e-55 HXXXD-type acyl-transferase family protein (.1) AT1G03495 154 / 2e-42 HXXXD-type acyl-transferase family protein (.1) AT1G03940 148 / 5e-40 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041658 [exp] 625 / 0 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10041655 [exp] 473 / 4e-166 AT3G29590 277 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Lus10041657 [exp] 352 / 7e-122 AT3G29590 143 / 3e-40 HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 253 / 1e-79 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 251 / 1e-78 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 248 / 4e-78 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 232 / 7e-72 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 229 / 1e-70 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 230 / 2e-70 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103200 [exp] 315 / 4e-104 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 306 / 2e-100 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 301 / 2e-98 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 283 / 2e-91 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 282 / 3e-91 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 281 / 6e-91 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 281 / 2e-90 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 279 / 6e-90 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G096300 [exp] 277 / 4e-89 AT3G29670 311 / 1e-101 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) Potri.004G096132 [exp] 276 / 7e-89 AT3G29670 308 / 2e-100 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10041656 pacid=23146750 polypeptide=Lus10041656 locus=Lus10041656.g ID=Lus10041656.BGIv1.0 annot-version=v1.0 ATGCCACCACTATCCCGCTCACTTTCTTCGACCTCTACTGGTTCCGTACCCCACCCGTTCAGCGTCTCCCTCACCGTTGCTGAATCCGCCGCCGACTTCA ACGCCCTAGCTTCCTACCAAATCCGCAGGTCCTCTGAATCTCATCCTTACATCCCGGTGTTGCCCCCTCCCGATTCGGAGGCCGCCGTTATAGCTCTCCA AGTCACTCTGTTTCCCAACCAAGGATTTTGCATCGGGGTGTCCAGCCACCACGCAGTTCTCGAAGGCAAATCCGCCACTCTTTTTATCAAGGCTTGGGCC CACCTATCATCCGACCGCGCTGTCGCCTCGTCCCTGCCGGAAGAACTTACCCCATTTTTTGATCAGTCAATTGTCAAGGATCCAGAAGGAGTGGATCAGG CATGTCTCGATTTCTGGACTGGGCTGGCCCATCCTGGCATGGGTAATCCTGATCGGAGAAGCTTGAAGCTGGCTCCATCTCTAATGGAGAGTAATTCATC CGACTCGGTCCGAGCCACATTCATCGTCTCTCAGGCAAGAATTCAGATGCTGAGGGAAAGGGTAACGGCGATGATGATGAAGAATAGCGGTGACGATAAT AAGAAGATCCGGTTATCAAGCTTCACCCTAACCTTCGCACATTCCATGGTTTGTTTGGTGAAAGCTAAACGGCTGGGAATAGGAAGCGACGCCGATAGGA AAGTAGTTCATTTGGCTATTGCGGCGGACGCAAGGGGTCGCCTGAAACCTCCTCTGCCAGCGAATTACGTAGGGAATTGTATTGTCGGTCGTCACGAATT AATCGAATTCGATGGAGTGGTTAAAGAAGAAACAGAAGGGGGAGGGATTGGATTTGTAGTGGAGAGAATCAGTAGAATGATTGATGACGTGGAGGAGAAA CCGACGGTGGATAAAGACAATTTGCCGAGGTTCATTAGAAATCTGGAAGCGAGCAGAGGAGTTTTCATCGGGACTGCTGGATCCCCTAAGTTCAACGTGT ACAGCGCTGATTTCGGATGGGGGAGACCGAAATCGGTGGAGGTGACGTCAATTGACCGGACGGGTGGAATTTCGATGGCGGAGTGCCGGGACGGGAGCCG TGGGATCGAGGTCGGATTGGCCCTGATGCCTTCGGAAATGGAACTCTTCCGCTCCGCCTTTGAAGCCTAG
AA sequence Show only first row Show all	>Lus10041656 pacid=23146750 polypeptide=Lus10041656 locus=Lus10041656.g ID=Lus10041656.BGIv1.0 annot-version=v1.0 MPPLSRSLSSTSTGSVPHPFSVSLTVAESAADFNALASYQIRRSSESHPYIPVLPPPDSEAAVIALQVTLFPNQGFCIGVSSHHAVLEGKSATLFIKAWA HLSSDRAVASSLPEELTPFFDQSIVKDPEGVDQACLDFWTGLAHPGMGNPDRRSLKLAPSLMESNSSDSVRATFIVSQARIQMLRERVTAMMMKNSGDDN KKIRLSSFTLTFAHSMVCLVKAKRLGIGSDADRKVVHLAIAADARGRLKPPLPANYVGNCIVGRHELIEFDGVVKEETEGGGIGFVVERISRMIDDVEEK PTVDKDNLPRFIRNLEASRGVFIGTAGSPKFNVYSADFGWGRPKSVEVTSIDRTGGISMAECRDGSRGIEVGLALMPSEMELFRSAFEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041656 [exp]	0	1
					Lus10014003 [exp]	1.7	0.9016
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10038925 [exp]	2.4	0.9030
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Lus10026999 [exp]	7.3	0.9058
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10031088 [exp]	9.2	0.8998
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10004708 [exp]	10.8	0.8811
AT1G24110			Peroxidase superfamily protein...		Lus10004234 [exp]	11.7	0.8521
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10035473 [exp]	16.4	0.8954
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10040275 [exp]	20.2	0.8712
AT1G74470			Pyridine nucleotide-disulphide...		Lus10001642 [exp]	22.9	0.8900
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	25.3	0.8742

Compare expression of checked genes

Lus10041656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.