Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39050 117 / 2e-30 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT5G39080 108 / 2e-27 HXXXD-type acyl-transferase family protein (.1) AT5G39090 105 / 3e-26 HXXXD-type acyl-transferase family protein (.1) AT3G29670 101 / 1e-24 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G61160 100 / 2e-24 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29680 99 / 9e-24 HXXXD-type acyl-transferase family protein (.1) AT1G03495 85 / 7e-19 HXXXD-type acyl-transferase family protein (.1) AT3G29590 83 / 3e-18 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT1G03940 81 / 2e-17 HXXXD-type acyl-transferase family protein (.1) AT3G29635 67 / 1e-12 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041656 [exp] 308 / 2e-104 AT3G29590 242 / 6e-76 HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 307 / 3e-103 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10041655 [exp] 233 / 3e-74 AT3G29590 277 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 152 / 4e-43 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 143 / 6e-40 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 132 / 1e-35 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 124 / 1e-32 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 123 / 2e-32 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10021389 [exp] 121 / 1e-31 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G455150 [exp] 163 / 1e-49 AT5G39050 191 / 7e-58 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 160 / 2e-46 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 153 / 1e-43 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 152 / 3e-43 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.010G208100 [exp] 147 / 2e-41 AT5G39050 332 / 3e-109 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 144 / 2e-40 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 144 / 3e-40 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 144 / 3e-40 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 144 / 4e-40 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 143 / 5e-40 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10041657 pacid=23146882 polypeptide=Lus10041657 locus=Lus10041657.g ID=Lus10041657.BGIv1.0 annot-version=v1.0 ATGGATAATCCTAGCCCGAGAAGCTTGAAGCTGGCTCCATCTTTAATGGACAATAATTCATCCGATTCGGTCCGTGGCACATTCCTCCTCTCTGAGGAAA GAATCCAGATGCTCAGGGAAAGGGTAACGACGACGATGATGAAGAATTACGGTGACATCAAGAAGATTCGGTTATCGAGCTTCGCCATAACCTTCGCACA TACCGTGGTTTGTTTGGTGAAAGCCAGAGGGCTCGGAATCGGAAGCGACGCCGATAGGAAAGTAGTTCATTTCGGTTTTACGGCGGACTCAAGGGGGCGG CTGAAACCTCCTCTGCCAGGGAATTACTTAGGGAATTGTGTCGTCGGTCGTCACGAGAAAATCGAAATCGAACAATTGGTTAAAGAAGAAGAAGAAGAAG GGGGAGAGATTGGATATGTAGTGGAGAGGATAAGTAGGATGATTGATGACGTGGAAGAGAAACCGACGTTGGAGAAAGACAAATTGTCGAGGTTGAGGAA GAGTCTGAAAGGGAGCAGAGGAGTGTTCATCGGGATTGCTGGCTCCCCTAAGTTCAACGTTTATGGCGCTGATTTCGGATGGGGGAGGCCGAAATTGGTT GAGATTACGTCGATTGATCGGACGGCCGGTTCCATTTCGATGGCAGAGTGCTGGGACGGGAGCCGTGGGATCGAGGTCGGATTGGTTTTGAAAGCTCATG AAATGGAACTCTTCCGCTCCATTTTTTAA
AA sequence Show only first row Show all	>Lus10041657 pacid=23146882 polypeptide=Lus10041657 locus=Lus10041657.g ID=Lus10041657.BGIv1.0 annot-version=v1.0 MDNPSPRSLKLAPSLMDNNSSDSVRGTFLLSEERIQMLRERVTTTMMKNYGDIKKIRLSSFAITFAHTVVCLVKARGLGIGSDADRKVVHFGFTADSRGR LKPPLPGNYLGNCVVGRHEKIEIEQLVKEEEEEGGEIGYVVERISRMIDDVEEKPTLEKDKLSRLRKSLKGSRGVFIGIAGSPKFNVYGADFGWGRPKLV EITSIDRTAGSISMAECWDGSRGIEVGLVLKAHEMELFRSIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041657 [exp]	0	1
AT5G01880			RING/U-box superfamily protein...		Lus10025144 [exp]	8.1	0.6778
					Lus10027558 [exp]	15.0	0.6665
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10040411 [exp]	16.3	0.6330
AT5G39130			RmlC-like cupins superfamily p...		Lus10003267 [exp]	25.5	0.6178
AT4G08630			unknown protein		Lus10004138 [exp]	25.7	0.6158
AT5G51105			Protein of unknown function (D...		Lus10043285 [exp]	29.1	0.6123
AT1G49290			unknown protein		Lus10041424 [exp]	31.1	0.6078
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009630 [exp]	33.2	0.6078
					Lus10011605 [exp]	35.2	0.6078
					Lus10024141 [exp]	37.1	0.6078

Compare expression of checked genes

Lus10041657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.