Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29590 294 / 6e-95 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT5G39090 287 / 3e-92 HXXXD-type acyl-transferase family protein (.1) AT3G29670 279 / 5e-89 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT3G29635 276 / 8e-88 HXXXD-type acyl-transferase family protein (.1) AT5G39080 276 / 8e-88 HXXXD-type acyl-transferase family protein (.1) AT5G61160 274 / 3e-87 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT5G39050 272 / 3e-86 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29680 245 / 6e-76 HXXXD-type acyl-transferase family protein (.1) AT1G03495 198 / 7e-58 HXXXD-type acyl-transferase family protein (.1) AT1G03940 192 / 1e-55 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041656 [exp] 625 / 0 AT3G29590 242 / 6e-76 HXXXD-type acyl-transferase family protein (.1) Lus10041655 [exp] 598 / 0 AT3G29590 277 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Lus10041657 [exp] 355 / 2e-121 AT3G29590 143 / 3e-40 HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 320 / 2e-104 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 315 / 3e-102 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 308 / 3e-100 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 308 / 6e-100 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 308 / 7e-100 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10021389 [exp] 291 / 3e-93 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103200 [exp] 377 / 6e-127 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 366 / 9e-123 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 360 / 3e-120 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 351 / 6e-117 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 350 / 2e-116 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 349 / 4e-116 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 348 / 9e-116 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 347 / 6e-115 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.010G208100 [exp] 340 / 1e-112 AT5G39050 332 / 3e-109 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 334 / 4e-110 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10041658 pacid=23146656 polypeptide=Lus10041658 locus=Lus10041658.g ID=Lus10041658.BGIv1.0 annot-version=v1.0 ATGGGGTCGACATCGGAAATCACCACCGTCGTCACTGTCCGCGAGCTCTGCCGAATCCCCCCGTCGTCCTCCAACTTAACAACTACCAATGATGCCGCCA CTATCCCACTCACAGCGTTCGATCTCTACTGGTTCCGTACTCCACCCGTTCAGCGCCTCTTCTTCTACTCTCTTCCATCTTCTTCCGGCGCCGATGTTTT CTACTCCGAGGTGATACCAACCCTCAAGTTCTCCCTCTCCGCCGCGCTTTCCTACTTCTACCTTGTAGCTGCCTCCCTCACCTGGCCCTCCAATTCCTCC AAGCCCTTCCTCCTCTACGACTCCTCCGCCGGCGTCTCCCTCACCGTCGCTGAATCCGCCGCTGATTTTAACTCCCTTGCCTCCTCCGACCAAATCCGCA GCTCTGGCGAATCTCATCCTTACATCCCGGTGTTGCCGCCTTCCGATCCGGAGCCCGCCGTCATAGCTCTCCAAATCACTCTGTTTCCTAACCAAGGATT TTGCATCGGGGTGTCCAACCACCACGCAGTCCTTGACGGTAAATCCGCTACTCTTTTTATCAAGGCTTGGGCTCACCTATCATCCAACAGCACCGTCGTC TCCTCTTCCACGCCAGAAGAACTTACCCCTTTTCTAGATCGGTCAATTGTCCAAGACCCGGAAGGGGTAGACCGAGCGTGCCTCGACTTCTGGACCGGGC TAGCCCATCCGGGCATGGGTAATCCTGACCGGAGAAGCTTGAAGCTGGCTCCATCTCTAATGGACAGTAATTCATCCGACTCGGTCCGAGCCACATTCCT CCTCTCTCATGAAAGAATTCAGATGCTGAGGGAGAGGGCGACAACGACGAACAAGAAGATTCGATTATCGAGCTTCGCCATAACCTTTGCACATTCCGTG GTTTGTTTGGTGAAAGCCAAACGGCTAGGAATCGGAAGCGACGCCGGTAGGAAAGTAGTTCATTTCGGTTTTACGGCGGACGCAAGGGGACGGCTGAAAC CTCCTCTGCCAGCGAATTACGTAGGGAATTGTGTAATAGGTTGTCACGAACTAATCGAATTCGATGGTGTGGTTAAAGAAGAAACAGAAGGGGGAGGGAT TGGATTTGTAGTGGAGAGAATCAGTAGAATGATTGATGACGTGGAGGAAAAACCTACGGTGGAGAAAGACAATTTGCCGAGGTTCATGAGGAATCTGGAA GCGAGCAGAGGAGTTTTCATCGGGATTGCTGGATCCCCTAGGTTCAACGTGTACAGCGCTGATTTCGGATGGGGGAGGCCGAAATCGGTGGAGGTGACGT CGATTGATCGGACGGGTGCAATTTCGATGGCGGAGTGCCGGGACGGGAGTCGTGGGATCGAGGTCGGATTGGCTTTGATGCCTCGTGAAATGGATCTCTT CCGCTCCGCTTTTGATGAAGCCTAA
AA sequence Show only first row Show all	>Lus10041658 pacid=23146656 polypeptide=Lus10041658 locus=Lus10041658.g ID=Lus10041658.BGIv1.0 annot-version=v1.0 MGSTSEITTVVTVRELCRIPPSSSNLTTTNDAATIPLTAFDLYWFRTPPVQRLFFYSLPSSSGADVFYSEVIPTLKFSLSAALSYFYLVAASLTWPSNSS KPFLLYDSSAGVSLTVAESAADFNSLASSDQIRSSGESHPYIPVLPPSDPEPAVIALQITLFPNQGFCIGVSNHHAVLDGKSATLFIKAWAHLSSNSTVV SSSTPEELTPFLDRSIVQDPEGVDRACLDFWTGLAHPGMGNPDRRSLKLAPSLMDSNSSDSVRATFLLSHERIQMLRERATTTNKKIRLSSFAITFAHSV VCLVKAKRLGIGSDAGRKVVHFGFTADARGRLKPPLPANYVGNCVIGCHELIEFDGVVKEETEGGGIGFVVERISRMIDDVEEKPTVEKDNLPRFMRNLE ASRGVFIGIAGSPRFNVYSADFGWGRPKSVEVTSIDRTGAISMAECRDGSRGIEVGLALMPREMDLFRSAFDEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041658 [exp]	0	1
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034838 [exp]	2.6	0.9848
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10005262 [exp]	3.7	0.9817
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038526 [exp]	4.9	0.9774
AT1G76750			Protein of unknown function (D...		Lus10004548 [exp]	7.9	0.9480
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023280 [exp]	8.1	0.9780
					Lus10020455 [exp]	8.4	0.9738
AT5G44390			FAD-binding Berberine family p...		Lus10038442 [exp]	11.0	0.9676
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10036396 [exp]	12.5	0.9778
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027586 [exp]	13.5	0.9726
					Lus10041163 [exp]	16.4	0.9775

Compare expression of checked genes

Lus10041658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.