Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35700 68 / 4e-13 C2H2ZnF DAZ3 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1) AT4G35610 63 / 3e-11 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT4G35280 49 / 2e-06 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT2G17180 44 / 8e-05 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT2G26940 42 / 0.0003 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016698 [exp] 181 / 2e-55 AT4G35700 74 / 4e-15 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1) Lus10035994 [exp] 180 / 6e-55 AT4G35610 68 / 5e-13 zinc finger (C2H2 type) family protein (.1) Lus10041633 [exp] 136 / 2e-38 AT4G35700 48 / 2e-06 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1) Lus10023932 [exp] 49 / 8e-07 AT4G35280 126 / 2e-35 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G100300 [exp] 71 / 4e-14 AT4G35700 68 / 4e-13 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1) Potri.004G205300 [exp] 51 / 4e-07 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.009G166200 [exp] 50 / 5e-07 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.001G224600 [exp] 45 / 6e-05 AT5G56200 71 / 8e-13 C2H2 type zinc finger transcription factor family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041659 pacid=23146736 polypeptide=Lus10041659 locus=Lus10041659.g ID=Lus10041659.BGIv1.0 annot-version=v1.0 ATGTCGAACTCAAACAGCTCCTCCGAAGATAACACAAACTCTGCCCCTTCCTCTCCTCCTCATCTCAGTCTCGCCACCACTGCCACCGACGCTGCCGCCA CTTCCTCCCCCAACCTCCATATTTCCGGGGAACAACAACAAGTTGCACAAGTCTCACAGGCTGCACAACTGACGGCGACAGTACCGCCGCCTCCGCCGCT GCCGCGGGCATCCTCAAGCAGGGGAGGAGTTGGCATCAGTACTATCTCTGTTTTGGCAGCCGGCGGAGCAATACGTTGGAGACCTTCTTCCTCTTCATCT GCTTCTACTGCTCCTATCCCAAACCCCCTGCTGATGGTACCCAGCACCATCACTACAGCCACCGAATTACTTGAACAAGCCTTTAAACATCCGCCGCCGC CACTTCCTCCTCCACAAGAACCCAATTGTAACCGTCAAAAAGGGGAAATGGACGTACCATCGGGTCCGCCATGTTGTCCAACATGCCGCAAGATGTTCCG ATCATGGAAGGCCGTGTTTGGACATTTACGGATGCACAAGGAGCGAACCTACCGCGGGGCCTTCCCTCCCCCGGTTTCTTCTGATGGATCATCTTCAAGT AGTACTGTTGCTATTACTAGTACCAACACAACTATTCGTAGGAGAGGGCTGGCTATAGATCTGAATGTCGAGTTCAATCCTGAGGATCATCAAGAGGCCG ATGAAAATATTGTTCATGTCGAGCAGGAGGCCCAAGCGTTGACTCCTCCTCCTCCTGCTCCTCTTCGGGAGTCCGCATCAATCGATTTAAATGAACCGGC GGCCAACAAGTCCGACGAAAAGGAGGGAGAAAACGGCAGTAGCAATAATGATAAGGCCAAGGAGTAG
AA sequence Show only first row Show all	>Lus10041659 pacid=23146736 polypeptide=Lus10041659 locus=Lus10041659.g ID=Lus10041659.BGIv1.0 annot-version=v1.0 MSNSNSSSEDNTNSAPSSPPHLSLATTATDAAATSSPNLHISGEQQQVAQVSQAAQLTATVPPPPPLPRASSSRGGVGISTISVLAAGGAIRWRPSSSSS ASTAPIPNPLLMVPSTITTATELLEQAFKHPPPPLPPPQEPNCNRQKGEMDVPSGPPCCPTCRKMFRSWKAVFGHLRMHKERTYRGAFPPPVSSDGSSSS STVAITSTNTTIRRRGLAIDLNVEFNPEDHQEADENIVHVEQEAQALTPPPPAPLRESASIDLNEPAANKSDEKEGENGSSNNDKAKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041659 [exp]	0	1
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10040652 [exp]	6.4	0.9165
AT1G49290			unknown protein		Lus10041424 [exp]	7.3	0.9305
AT3G22640		PAP85	cupin family protein (.1)		Lus10042617 [exp]	9.4	0.7060
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	10.4	0.9305
AT3G50150			Plant protein of unknown funct...		Lus10005799 [exp]	12.7	0.9305
					Lus10024141 [exp]	14.7	0.9305
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	16.4	0.9305
AT3G45280		ATSYP72, SYP72	syntaxin of plants 72 (.1)		Lus10036118 [exp]	16.7	0.7956
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10025338 [exp]	17.2	0.7806
					Lus10013255 [exp]	18.0	0.9305

Compare expression of checked genes

Lus10041659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.