Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028018 [exp] 44 / 7e-06 ND 39 / 5e-04 Lus10015472 [exp] 42 / 2e-05 AT5G48540 42 / 4e-05 receptor-like protein kinase-related family protein (.1) Lus10028019 [exp] 40 / 7e-05 AT1G70530 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10012369 [exp] 40 / 8e-05 AT4G11470 42 / 6e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) Lus10039496 [exp] 40 / 0.0001 ND 40 / 3e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120401 [exp] 40 / 0.0002 AT3G22060 271 / 3e-92 Receptor-like protein kinase-related family protein (.1) Potri.007G120400 [exp] 40 / 0.0002 AT3G22060 270 / 8e-92 Receptor-like protein kinase-related family protein (.1) Potri.005G208400 [exp] 39 / 0.0003 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10041665 pacid=23146888 polypeptide=Lus10041665 locus=Lus10041665.g ID=Lus10041665.BGIv1.0 annot-version=v1.0 ATGGCGGCGCCAAGGATATATATTTTATACATGTTCATGATAGTGTTTGCAACATTCGGCCTTGGTATTCACAGAAGCACAGCTGCCGGCCGTTTAAGCG CCGCCGTGGTTTGCAGGCTGGATAAGTTTGGGGAAGGGGATCCTCGTATAGGGTGCATGGAAGAGTTCGTGGAGGAGATGGTACAGGCGTGTCGATCTAC GACCAAGATTTGTAAGACTGGTGGGTATAAGATTTGCTCCGACACCACTACCATTTACGGCACCGCGAGTTCGACCCTCACCGGCTGTCTCGAGGAAGCC CAACAGAGCATTCTAAGTGATTGCCCTAACGCCACTGGAGCTCAGTCCATTGTTGACTCTGGTGTTTGTCAACTTAGGTATGAGATCTACCCCTACCTGG ATTGA
AA sequence Show only first row Show all	>Lus10041665 pacid=23146888 polypeptide=Lus10041665 locus=Lus10041665.g ID=Lus10041665.BGIv1.0 annot-version=v1.0 MAAPRIYILYMFMIVFATFGLGIHRSTAAGRLSAAVVCRLDKFGEGDPRIGCMEEFVEEMVQACRSTTKICKTGGYKICSDTTTIYGTASSTLTGCLEEA QQSILSDCPNATGAQSIVDSGVCQLRYEIYPYLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041665 [exp]	0	1
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10003782 [exp]	1.4	0.9450
AT2G21720			Plant protein of unknown funct...		Lus10010668 [exp]	2.8	0.9222
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10024334 [exp]	3.2	0.8916
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Lus10023137 [exp]	3.5	0.8995
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10004215 [exp]	4.6	0.8656
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	6.5	0.9160
AT5G23160			unknown protein		Lus10013437 [exp]	24.8	0.8504
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10024228 [exp]	30.8	0.8220
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10035445 [exp]	31.0	0.7973
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10014300 [exp]	32.2	0.8278

Compare expression of checked genes

Lus10041665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.