Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36290 439 / 3e-153 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 431 / 1e-149 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 427 / 1e-148 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 407 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 400 / 7e-138 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 393 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 345 / 2e-116 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 296 / 2e-97 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 288 / 3e-94 alpha/beta-Hydrolases superfamily protein (.1) AT3G44510 282 / 5e-92 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034148 [exp] 531 / 0 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 526 / 0 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 524 / 0 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 521 / 0 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 512 / 0 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 447 / 1e-156 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 442 / 5e-154 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10021371 [exp] 428 / 2e-148 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10034135 [exp] 414 / 2e-143 AT3G48410 396 / 9e-138 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237700 [exp] 488 / 1e-172 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 484 / 1e-170 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 480 / 2e-169 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 476 / 8e-168 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 463 / 6e-163 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 376 / 1e-128 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 370 / 2e-126 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 325 / 8e-109 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 150 / 5e-40 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 145 / 4e-38 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10041666 pacid=23147017 polypeptide=Lus10041666 locus=Lus10041666.g ID=Lus10041666.BGIv1.0 annot-version=v1.0 ATGGTTTCTCGGCGTTTCTGGTCCTCCTCCTCCGCCTTAGATTCAACTCGCTACCCAGTTCGTTCATCAACACGCCTTTCTCTTCCTAGTTTCTCTCTCT GCTCCTCTCCATCTCCGCGTCCCTACGCCGGTGGTTTGACTAGTCGATTGTCCCTGCCACCCGGTTCGGCTACTCAAAATGCCTTCTACTCTCCGATTCG ACGAAGCGGAAGTCACGGTCCTTATTGTCGGCCGCTTCTGGACACTAGGAGCAGAGCATTTCACTTTGATGATTTTCAGGTAACCCATTTTCCCCGACAC TGGTTCTGCGAAATTACGATTATGTTCAGACAGCAACAACAAGATTTCGAATTCCTTCCAATCGATGAATCTACTCCAACTGTTAACTTGCTTGCTGCCA TCCGCCCTGCGCCTCCCAAGATCTGTGGGACGCCCGGTGGGCCTCCAGTGACGGCACCCAGGATAAAGCTCAGGGATGGAAGGCATTTGGCCTACAAAGA ACATGGAGTTCCCAAAGATGATGCCAAGCATAAGATTATATTTGTCCATGGCTTCACCTCTTGCAGACTCGATCCAACGATTGTCACCAGCCTCACCCCG GAAGTAATTGAGGAGTTGGGTGTTTATGTTGTGACATTTGACCGTCCTGGGTATGGGGAAAGTGATCCTGATCCATATCGCACGCCGAAGAGTTTGGCTT TTGACATAGAGGAGCTTGCTGATGGGTTAGGATTAGGTTCCAGATTCTTTGTGATGGGGAAATCAATGGGAGGCCAGGTTGTTTGGGGCTGCCTTAAGTA TATCCCTCACCGGTTAGCTGGAGCAGCGTTGCTTGCCCCAGTTATCAATTATTGGTGGCCTGGTTTCACTGCAGATCTACGAAAAGAAGCTTACAACTTG CAGCTACCACAAGATCAATGGGCATTGCGTGTGGCTCACTATGCTCCTTGGTTAACTTACTGGTGGAATACACAGAAACTATTTCCTTCATCTGGTGTGA TAGCTAGAAAACCCGAAACTATGTCTCGCCAGGATTTAGAGCTAGTATCCAAGTTTGGTCGTGGACAAGATCTCAAGAAAGTGGCAACGCAACAAGGAGA ATTCGAATCGCTGCATAGAGACATGATGGTTGGATTTGGGAAATGGGATTTCGATCCAATGGATATCGAGAATCCTTTCCCTGATAACAAAGGCTCAGTT CAGTTGTGGCAAGGAGACGACGATAAGAAGGTGCCTGTAATACTACAGCGGTATATTGCTCAGAAGCTTCCATGGATTCAGTACCATGAGGTTCCAGAAG GAGGACATGTGCTTCATCTTGTTCCAGGATTGATTGAACAAGTTCTAAGGGCACTTCTTTTAGGGACAAATTAG
AA sequence Show only first row Show all	>Lus10041666 pacid=23147017 polypeptide=Lus10041666 locus=Lus10041666.g ID=Lus10041666.BGIv1.0 annot-version=v1.0 MVSRRFWSSSSALDSTRYPVRSSTRLSLPSFSLCSSPSPRPYAGGLTSRLSLPPGSATQNAFYSPIRRSGSHGPYCRPLLDTRSRAFHFDDFQVTHFPRH WFCEITIMFRQQQQDFEFLPIDESTPTVNLLAAIRPAPPKICGTPGGPPVTAPRIKLRDGRHLAYKEHGVPKDDAKHKIIFVHGFTSCRLDPTIVTSLTP EVIEELGVYVVTFDRPGYGESDPDPYRTPKSLAFDIEELADGLGLGSRFFVMGKSMGGQVVWGCLKYIPHRLAGAALLAPVINYWWPGFTADLRKEAYNL QLPQDQWALRVAHYAPWLTYWWNTQKLFPSSGVIARKPETMSRQDLELVSKFGRGQDLKKVATQQGEFESLHRDMMVGFGKWDFDPMDIENPFPDNKGSV QLWQGDDDKKVPVILQRYIAQKLPWIQYHEVPEGGHVLHLVPGLIEQVLRALLLGTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10041666 [exp]	0	1
AT1G77800			PHD finger family protein (.1....		Lus10009786 [exp]	1.0	0.8847
AT5G57700			BNR/Asp-box repeat family prot...		Lus10006994 [exp]	2.4	0.8677
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	6.2	0.8542
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	7.1	0.8392
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10032737 [exp]	7.1	0.8216
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10003676 [exp]	7.9	0.7878
AT3G25840			Protein kinase superfamily pro...		Lus10035032 [exp]	8.0	0.8452
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10026202 [exp]	8.5	0.8388
AT3G58530			RNI-like superfamily protein (...		Lus10015980 [exp]	8.7	0.7996
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10021558 [exp]	11.5	0.7876

Compare expression of checked genes

Lus10041666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.