Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 297 / 7e-95 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26310 291 / 2e-92 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26270 288 / 2e-91 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT3G26230 288 / 3e-91 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT3G26320 287 / 3e-91 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26330 286 / 9e-91 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26210 285 / 4e-90 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G26290 282 / 5e-89 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT5G25140 280 / 2e-88 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G26280 278 / 1e-87 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028926 [exp] 494 / 3e-171 AT3G26330 382 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10002885 [exp] 421 / 9e-143 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10026252 [exp] 433 / 1e-142 AT5G25120 383 / 2e-123 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10030708 [exp] 410 / 1e-138 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10013194 [exp] 393 / 5e-132 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10042815 [exp] 393 / 9e-132 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016601 [exp] 390 / 6e-131 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10042419 [exp] 386 / 2e-130 AT3G48280 343 / 3e-114 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10012767 [exp] 389 / 3e-130 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 401 / 3e-135 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 399 / 1e-134 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 396 / 3e-133 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 395 / 4e-133 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 392 / 8e-132 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 384 / 1e-128 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 381 / 2e-127 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 379 / 1e-126 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 378 / 3e-126 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.001G365300 [exp] 338 / 1e-111 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10041667 pacid=23146646 polypeptide=Lus10041667 locus=Lus10041667.g ID=Lus10041667.BGIv1.0 annot-version=v1.0 ATGGATTATTATTCCCTACTCTTCATTCCTTTCCTAACACTAATGATCCTCCTGATAATTCGAAACACCGGCAGCAACAAGAAACATAGCCAGACTCTGC CGCCGCCGCCAGGCCCACGGAAGCTCCCAATCATAGGGAACATCCACCAGCTGATATCTAGCTTACCCCACCGCCGCCTCCGCGACCTGGCCCACAAGTA CGGACCTGACGTCATGCAGCTCCAGCTAGGCGAGCTCAACCACGTCATCATCTCTTCCGCGGAGGCAGCCAGAGAAGTTATGAAGACCCACGACCTCGCT TTCGCCTCCAGGCCCACCTTCCTTGGCGCCGACATCGTCGTCTACGCCGGAAAAGACCTCGCCTTCACTCCCTACACCGACTACTACCGAAAGCTCCGCA AGCTCGTCGTCGTGGAGCTTCTGGGAGCGAAGCGGGTCCGGTCGTTCAGGCTGGTCAGGGAAGGAGAGGTGGCGGAATTGATCCGTAGCCTTCGCCGGAG TGCGGAGGAGGAGGCGGCGGTGGACTTGGGGAAGGCGATGTTCGGGGTGACGATGCGGGTGACGAATAGGACGGCGTTCGGGAAGGTGAGGGGGAAACTA GAGGTGGGAGAGTTCTTCAAGTTGATAGAGAAGATTTCCGATGTGATGGGAGGACTGAAGATATCGGATTTGTTCCCGTCGATGAAATGGCTGCCGGTGG TCAACGGGTATAAAGGTCAACTCATGGAGATTCATCGCCAGGTGGATGGGATGCTTGACCATATAATAAGCGTGTACAAAGAGCGCAGAAGATCATTGCC ATTGGGAGGTGAAACGACGACGGATGAGGATGATCTTGTTGATGTTCTTTTGCATCTTGAGGAGAGTGGCGACCTTGGCTTCACCTTGACTTTGGAAAAT GTCAAAGCTGTCACCCTTGAAATATTCTTGGCCGGAGTGGAAACGACGGCAACCTCGATGGACTGGACGATGGCAGAACTAATGAAAAACCCAAGAGTGA TGGAAAAGGTACAAAAGGAAGTAAGGGAAGTGTACAGTAAGAAACCAACAGTTGATGAAGAGAATATGCATGAATTGAAGTACTTGGAGTTGGTCATCCA AGAAAGTTTAAGGTTGCATCCCTCACTACCGTTGCTTCTCCCAAGGGAAAATCAAGAGAGGGCAGAGATTATGGGTTACGAGATCCCACCCAAGACCAAA GTTATCATCAACGGGTGGGCGATTGGGAGAGACCCTCGCTACTGGGTCGAACCCGAAAAATTCTACCCCGAAAGGTTTCTCCAAGCGTCGCCTACTGATA AAAGTTCCAAGGGAATAGATCATAACTTTGAGTACATTCCGTTTGGGGCTGGAAGGAGGATGTGTCCTGGAATTTCCTTTGCTTTGCCGGTTATGAAACT TACCTTGGCTAATTTGCTATTCCACTTCAATTGGAAACTCCCAGCTGGACTGAATCCTGAAGACTTGGACATGACGGAACGTTTTGGGAATTCTGTGAGG AGAGATGGCATTCTGAGTTTGATTCCAATTGCATATCGCGCAATATAA
AA sequence Show only first row Show all	>Lus10041667 pacid=23146646 polypeptide=Lus10041667 locus=Lus10041667.g ID=Lus10041667.BGIv1.0 annot-version=v1.0 MDYYSLLFIPFLTLMILLIIRNTGSNKKHSQTLPPPPGPRKLPIIGNIHQLISSLPHRRLRDLAHKYGPDVMQLQLGELNHVIISSAEAAREVMKTHDLA FASRPTFLGADIVVYAGKDLAFTPYTDYYRKLRKLVVVELLGAKRVRSFRLVREGEVAELIRSLRRSAEEEAAVDLGKAMFGVTMRVTNRTAFGKVRGKL EVGEFFKLIEKISDVMGGLKISDLFPSMKWLPVVNGYKGQLMEIHRQVDGMLDHIISVYKERRRSLPLGGETTTDEDDLVDVLLHLEESGDLGFTLTLEN VKAVTLEIFLAGVETTATSMDWTMAELMKNPRVMEKVQKEVREVYSKKPTVDEENMHELKYLELVIQESLRLHPSLPLLLPRENQERAEIMGYEIPPKTK VIINGWAIGRDPRYWVEPEKFYPERFLQASPTDKSSKGIDHNFEYIPFGAGRRMCPGISFALPVMKLTLANLLFHFNWKLPAGLNPEDLDMTERFGNSVR RDGILSLIPIAYRAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10041667 [exp]	0	1
AT5G53110			RING/U-box superfamily protein...		Lus10012628 [exp]	5.5	0.8658
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033582 [exp]	6.1	0.8752
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10007326 [exp]	8.0	0.8465
					Lus10041755 [exp]	15.9	0.7916
AT1G18010			Major facilitator superfamily ...		Lus10009416 [exp]	16.4	0.8041
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10003805 [exp]	20.9	0.8695
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033581 [exp]	24.7	0.8435
AT2G41480			Peroxidase superfamily protein...		Lus10020422 [exp]	26.8	0.8653
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10011958 [exp]	29.5	0.8535
AT5G39160			RmlC-like cupins superfamily p...		Lus10042517 [exp]	31.5	0.8381

Compare expression of checked genes

Lus10041667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.