Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80880 511 / 2e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15010 276 / 8e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 171 / 7e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 169 / 2e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G80550 153 / 6e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15200 154 / 1e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 139 / 2e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04130 138 / 5e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G62470 138 / 8e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 137 / 2e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021991 [exp] 278 / 9e-86 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037555 [exp] 152 / 2e-40 AT1G80550 460 / 4e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011439 [exp] 151 / 3e-40 AT1G80550 460 / 2e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 154 / 7e-40 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 151 / 6e-39 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 149 / 3e-38 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003461 [exp] 149 / 3e-38 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041193 [exp] 147 / 8e-38 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031837 [exp] 139 / 2e-35 AT3G15200 499 / 2e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G043500 [exp] 598 / 0 AT1G80880 570 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G053600 [exp] 285 / 6e-89 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G084000 [exp] 158 / 6e-42 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G147200 [exp] 153 / 5e-41 AT1G80550 547 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G115500 [exp] 154 / 2e-40 AT3G15200 546 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 148 / 9e-39 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 145 / 1e-37 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 145 / 4e-37 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G055500 [exp] 144 / 4e-37 AT3G04130 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G083900 [exp] 144 / 8e-37 AT3G22670 439 / 1e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041669 pacid=23146795 polypeptide=Lus10041669 locus=Lus10041669.g ID=Lus10041669.BGIv1.0 annot-version=v1.0 ATGTCATTCATCTCCATTACGAGGATCTTACGGAGCTTCCACTCTCATTTCTTCCTTTCGTTTCCTCGCTCGATTGCTCCCTTGCCATATGCCCCATTGT CAACTCTAGCCACGTCGCCTCTCGTCTTCCCTTTCTTCTGGTCATTTCATCGAGCACCTTGCCTACAAATATCCCAACTTTCTCGCTGTTTCTCTTCTCG CCAAACTCAAAATCCTGGAACCGTTCTTCAGCTCATTCAAGAAAGGATCAGTCACCATGATGATCCTTCGAGGAATCCTCTCATGGAAGCACTCAAGGTG GCTTCCCAGTTCTCCACTGAAACAGAGGCTATGGCATCTTTGGATGACTGCGGCATCAAACCCAGTCTGAATTTGGTATATTCGGTCATCTGGGAGTTGA GAGAGAATTGGAAATCTGCGTTCTTGGCCTTCAAATGGGGAGACAAATGGGAGTGTGCTGATGAGAGATCCTGTGAACTGCTTGTATGGGTTCTGGGAAA TCATCAAAAGTTCGGCATTGCTTGGACTTTGGTTCGAGACTTGCATCGTGCCTCGTTGAGTACCCGCAGTGCATTGCTCATTATGATTGACAGATATGCT GCTGCAAACAATCCTGGAAAAGCTATATGGACATTCCATGTGATGGAAAAGTTCAGGATGTCTCCAGACGAAGAAGCTTTCTACTCTTTGCTAAGAGCTC TGTGCAACCATGGAAACATTGAAGAGGCTGAGGAATTCATGCTTTCCAGTAAGAAACTTTTCCCACTGCAAGCTGATGGGTTCAACATCATCCTCTCCGG TTGGTGTAACATTTTTGTTGATATATTTGAAGCCAAGCGGATTTGGAGAGAGATGTCCAAATCCTGCATCTTGCCTAATGCTACTTCTTACACGCTTCTG ATTTCCTGCTTTGCAAAGATTGGAAATCTCTTCGACTCAGTGCGACTTTATGAAGAAATGAAGAAAAGGGGTTGGTCACCCGGCATCGAGGTTTACAATT CTCTAATCTACGTGCTAACTCGCGAAAACATGTGTAAGGAAGCTTCGAAAATTCTGGACAAGATGAAACAGGAAGGAATTCAGCCCGATTCGTCCACTTA CAACTCGATGATACGTCCATTGTGCGAAGCAAAAAGGCTAGAGGAGGCAAGAGATGTATTGGCTACAATGATGGAGAGTAATGTTAAACCAACTACAGAG ACTTACCATGCGTTTATAGAAGGTTCTTCTGATCTGAACGTGTGTCTGGAGTTGCTTGGGCAAATGAGAAAAGAAGGGTTAGGTCCCGAAGGAAGAACCT TTCTGTCGATTCTGGACAAGTCCTTCAAGATGGGGCAACCAAAGGATGCATTGGATGTATGGGCGGAAATGAAGCGATGCGAAGTGGCGGCTGAGGAAGC ACATTATGAGATGTTGGTGGAAGGCCTGGCTAGGCGTGGAATGTTAGAGAGGGCGAGACATTATTATGGCGAGATGGGATCGAAAGGGTTCTCTTGTAAT CCAAAACTTGAGAAGATGCTGACTGAAGCAGTGCCGGAAAACATTGGAAGAATAGAACTTTCATCTGGACGAGTTCATGGAGTTGGAAGTAAGAGGGGCA CTCCATTAAGAAAGAAGGTTTGA
AA sequence Show only first row Show all	>Lus10041669 pacid=23146795 polypeptide=Lus10041669 locus=Lus10041669.g ID=Lus10041669.BGIv1.0 annot-version=v1.0 MSFISITRILRSFHSHFFLSFPRSIAPLPYAPLSTLATSPLVFPFFWSFHRAPCLQISQLSRCFSSRQTQNPGTVLQLIQERISHHDDPSRNPLMEALKV ASQFSTETEAMASLDDCGIKPSLNLVYSVIWELRENWKSAFLAFKWGDKWECADERSCELLVWVLGNHQKFGIAWTLVRDLHRASLSTRSALLIMIDRYA AANNPGKAIWTFHVMEKFRMSPDEEAFYSLLRALCNHGNIEEAEEFMLSSKKLFPLQADGFNIILSGWCNIFVDIFEAKRIWREMSKSCILPNATSYTLL ISCFAKIGNLFDSVRLYEEMKKRGWSPGIEVYNSLIYVLTRENMCKEASKILDKMKQEGIQPDSSTYNSMIRPLCEAKRLEEARDVLATMMESNVKPTTE TYHAFIEGSSDLNVCLELLGQMRKEGLGPEGRTFLSILDKSFKMGQPKDALDVWAEMKRCEVAAEEAHYEMLVEGLARRGMLERARHYYGEMGSKGFSCN PKLEKMLTEAVPENIGRIELSSGRVHGVGSKRGTPLRKKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80880			Tetratricopeptide repeat (TPR)...		Lus10041669 [exp]	0	1
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10012735 [exp]	2.4	0.7981
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10043248 [exp]	2.4	0.8161
AT2G19490			recA DNA recombination family ...		Lus10017151 [exp]	4.2	0.8061
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10016548 [exp]	5.3	0.7891
AT5G48470			unknown protein		Lus10038234 [exp]	11.0	0.7398
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10005561 [exp]	12.8	0.7453
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Lus10001388 [exp]	17.0	0.7563
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10008577 [exp]	20.2	0.7384
AT5G06430			Thioredoxin superfamily protei...		Lus10021764 [exp]	21.1	0.6806
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	24.0	0.7862

Compare expression of checked genes

Lus10041669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.