Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06440 494 / 7e-175 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 232 / 9e-72 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G33495 223 / 1e-68 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 137 / 4e-36 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G01037 136 / 4e-35 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 130 / 1e-33 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 127 / 4e-32 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 124 / 4e-31 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G71850 122 / 2e-30 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 120 / 3e-30 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027440 [exp] 228 / 1e-69 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005755 [exp] 228 / 1e-69 AT4G33495 608 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 134 / 7e-35 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000847 [exp] 133 / 7e-35 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10005945 [exp] 133 / 5e-34 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 133 / 6e-34 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10011327 [exp] 131 / 7e-34 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10035074 [exp] 133 / 1e-33 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012201 [exp] 130 / 1e-33 AT5G48040 424 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245100 [exp] 507 / 1e-179 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G244900 [exp] 444 / 1e-155 AT1G06440 503 / 7e-180 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.016G030300 [exp] 236 / 6e-73 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.015G141700 [exp] 218 / 4e-66 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 134 / 7e-35 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.014G096800 [exp] 135 / 8e-35 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 133 / 6e-34 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 131 / 9e-34 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 130 / 1e-33 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 122 / 1e-30 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10041673 pacid=23146863 polypeptide=Lus10041673 locus=Lus10041673.g ID=Lus10041673.BGIv1.0 annot-version=v1.0 ATGGCGTTTCTGTTGTCTGCTAGTTTGTGTATCATTGAAAGTGCTGAACTTACTTTTGCCATTGATAGATTAATCAATCCTCAGGCTGAAATGAGAGCAA GTCTGGGTGGGGACGTCACAGCCAAGATGATCAAATTGAGGCCGAAACAACTATTTGCTGCATATATGACGGTAAGATCCAAAACTACCTCTACGCAGTA TGTAGAATCGAGAGCCAGAGACCCTGTGTTTGAGAAATACATGGACAAGTACAAAAACCTGTTGAAAGTCATTTCCATCCAAGACCTTATTCTTTCAAAT CCCACAAGAAACCCACCCTCGGTTTCCCTCGATTTCCTCAACAGACTCTCCCAGAAGCTACACCTTAATCGCGGGGCAGCCTCTTTCCTCCGCAGATACC CTAACATCTTCCATATCTTCTACGAAACAACAGTCTCTCAGCCCTTTGTCAGACTAACTGAGATTGCTTCGCAAATTTGTCTGGAAGAGGCAGAGGCTAT TAGGAAAATCATTCCCACCGTTGTTGATAGGTTGGTTCGTCTTTTATCCATGTCACAGTCCAAATCTTTACCTCTCCGTGCCATCTACAAGGTTTGGAAG GAGCTCGGGCTCCCCGATGATTTTGAGGATTCGGTGATATCTCAAAATCCGCATATTTTCAGACTCTGTGATGCCCATGAACCTCATACACACACCTTGA AGCTGGTGGATGAGTTTCCATGTTGTCATCTGAGGACTGTAGTTGAGGATTGGAGGAGGGTATCGGTTACGGAGAAATTTGAACCAGATCCAACTGAAAA CCAGTTTGGTTTCAAGCTTCAGTACCCTCCAGGAATGCGGCTGAGCAAGAACTTTAGGGCCAAGGAAAAAGAATGGCAAAACCTCCCTTACGTGGGCCCT TACGAAGATTCGAGGGAGAGAAAGCAGCAGTCTAAGGCAGGGATGAAAAGAATCGAGAAAAGAGCGTTAGCAATTGCGCACGAATTCCTGAGTTTGACAG TGGAGAAGACGGTTGAAGTTGAGAAGATTAGCCATTTCAGGAAGTGGTTTGAGATGGAGTTAAATGTCAGGGACTTGTTCTTGGATCATCCGGGCATATT TTACTTGTCAACGCAGGGAAATAGGCATACTGTTTTCCTAAGGGAAGCTTACGAAAGGGATCGTTTGGTATCTCCTAATTCAGTGTACACTGTGAGAAGA AAGTTGTTTGACCTTGTCCTGTTAGGTCGGCATGAATTATGTCCTAGTAGTAAGTTGGGGAGCGAGGTGCTTGGTTTACAGTACGGTAAATGA
AA sequence Show only first row Show all	>Lus10041673 pacid=23146863 polypeptide=Lus10041673 locus=Lus10041673.g ID=Lus10041673.BGIv1.0 annot-version=v1.0 MAFLLSASLCIIESAELTFAIDRLINPQAEMRASLGGDVTAKMIKLRPKQLFAAYMTVRSKTTSTQYVESRARDPVFEKYMDKYKNLLKVISIQDLILSN PTRNPPSVSLDFLNRLSQKLHLNRGAASFLRRYPNIFHIFYETTVSQPFVRLTEIASQICLEEAEAIRKIIPTVVDRLVRLLSMSQSKSLPLRAIYKVWK ELGLPDDFEDSVISQNPHIFRLCDAHEPHTHTLKLVDEFPCCHLRTVVEDWRRVSVTEKFEPDPTENQFGFKLQYPPGMRLSKNFRAKEKEWQNLPYVGP YEDSRERKQQSKAGMKRIEKRALAIAHEFLSLTVEKTVEVEKISHFRKWFEMELNVRDLFLDHPGIFYLSTQGNRHTVFLREAYERDRLVSPNSVYTVRR KLFDLVLLGRHELCPSSKLGSEVLGLQYGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06440			Ubiquitin carboxyl-terminal hy...		Lus10041673 [exp]	0	1
AT4G16100			Protein of unknown function (D...		Lus10016842 [exp]	2.8	0.8677
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	5.7	0.8759
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026919 [exp]	7.5	0.8657
AT1G29370			Kinase-related protein of unkn...		Lus10020762 [exp]	7.5	0.8335
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10001566 [exp]	11.5	0.8553
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10041301 [exp]	18.3	0.8482
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016405 [exp]	23.5	0.8228
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10002762 [exp]	23.9	0.7817
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031336 [exp]	24.0	0.8309
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10018357 [exp]	24.2	0.8428

Compare expression of checked genes

Lus10041673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.