Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80760 259 / 1e-87 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT4G10380 243 / 4e-81 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT4G18910 167 / 2e-51 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT4G19030 163 / 6e-50 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT5G37820 161 / 2e-49 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT5G37810 159 / 1e-48 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT1G31885 157 / 2e-47 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT2G34390 137 / 8e-40 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT3G06100 127 / 4e-36 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT2G29870 82 / 4e-20 Aquaporin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024066 [exp] 345 / 2e-121 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10033268 [exp] 249 / 1e-83 AT4G10380 449 / 1e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10010153 [exp] 246 / 2e-82 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10017358 [exp] 242 / 7e-81 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10029274 [exp] 172 / 1e-53 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10007322 [exp] 165 / 5e-52 AT4G18910 276 / 2e-94 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10035999 [exp] 164 / 1e-50 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10020929 [exp] 155 / 1e-46 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10041222 [exp] 145 / 8e-43 AT3G06100 275 / 3e-92 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G046800 [exp] 300 / 2e-103 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.003G180900 [exp] 296 / 2e-102 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G455000 [exp] 243 / 3e-81 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.011G146900 [exp] 241 / 3e-80 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.011G072100 [exp] 176 / 3e-55 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.004G063000 [exp] 175 / 7e-55 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.017G083300 [exp] 168 / 4e-52 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 162 / 5e-50 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.002G097000 [exp] 157 / 5e-48 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.017G128200 [exp] 149 / 1e-44 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10041674 pacid=23146648 polypeptide=Lus10041674 locus=Lus10041674.g ID=Lus10041674.BGIv1.0 annot-version=v1.0 ATGGTGGTGATTCTGTCGACGGGGCACATCTCGGGGGCCCACCTCAACCCTGCCGTTACCATTGCATTCGCTTCTGTCAGACACTTCCCCTGGAGGCACG TCCCCGTCTACATTGCTGCTCAAGTGGTGGCGTCCACGTGCGCCGCCTTCTCCCTGAAGGGAGTGTTTCATCCCGTGATGGACGGCGGGGTGACGGTTCC TTCCGGAAATCACGCCCAGGCTTTTGCTTTGGAGTTCATTATCAGTTTCATTCTCATGTTTGTCGTCACCGCCGTCGCCACCGACACCAGAGCTGTAGGG GAGCTGGCCGGAATAGCTGTAGGGGCAACTGTAATGCTCAATATACTTATTGCTGGGAACACGACAGGGGCTTCCATGAACCCGGTGAGAACTTTGGGGC CAGCCATTGCGGCTAACAACTACACGGCTATATGGATTTACATCACTGCCCCCGTTCTCGGGGCACTATGTGGAGCAGGGACTTATGTTGCTGTTAAGCT GCCTGAGGAGGACGGTGATCATGTTAATCACAAGTCATCCACATCCAGGAGCTTCACAAGATGA
AA sequence Show only first row Show all	>Lus10041674 pacid=23146648 polypeptide=Lus10041674 locus=Lus10041674.g ID=Lus10041674.BGIv1.0 annot-version=v1.0 MVVILSTGHISGAHLNPAVTIAFASVRHFPWRHVPVYIAAQVVASTCAAFSLKGVFHPVMDGGVTVPSGNHAQAFALEFIISFILMFVVTAVATDTRAVG ELAGIAVGATVMLNILIAGNTTGASMNPVRTLGPAIAANNYTAIWIYITAPVLGALCGAGTYVAVKLPEEDGDHVNHKSSTSRSFTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10041674 [exp]	0	1
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10041675 [exp]	1.0	0.9298
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021436 [exp]	2.8	0.8860
AT5G62360			Plant invertase/pectin methyle...		Lus10038915 [exp]	3.5	0.8537
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016129 [exp]	3.9	0.8590
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10029038 [exp]	5.0	0.8471
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10012570 [exp]	6.9	0.8427
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Lus10006930 [exp]	11.2	0.7454
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10005927 [exp]	16.2	0.7718
AT4G25480	AP2_ERF	CBF3, DREB1A, A...	C-REPEAT BINDING FACTOR 3, de...		Lus10024491 [exp]	16.7	0.7897
AT4G38840			SAUR-like auxin-responsive pro...		Lus10038191 [exp]	18.9	0.8221

Compare expression of checked genes

Lus10041674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.