Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041677 [exp] 373 / 2e-131 ND / Lus10018646 [exp] 247 / 7e-83 ND / Lus10010387 [exp] 231 / 6e-77 ND / Lus10028987 [exp] 189 / 5e-59 ND / Lus10026135 [exp] 100 / 2e-24 ND / Lus10008678 [exp] 80 / 6e-17 ND / Lus10035524 [exp] 66 / 6e-13 ND / Lus10016944 [exp] 60 / 1e-10 ND / Lus10033372 [exp] 60 / 2e-10 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07246 [flax] [poplar] Phlebovirus_NSM Phlebovirus nonstructural protein NS-M
Representative CDS sequence Show only first row Show all	>Lus10041676 pacid=23146918 polypeptide=Lus10041676 locus=Lus10041676.g ID=Lus10041676.BGIv1.0 annot-version=v1.0 ATGGCATCACGGGTTGTGCTCAACTCCAACAACCAATGGCTCGTTGCAGTTTCCGACCGCACCATCATCGTGACGGATCCGGGTCGGGATCTCAACACCC ACAACCTCCCCACCACCATAGAGCAGTGGCGCCAGGTGGCTCGGGTCGGATCCAACAACGCATCCACCCACCGCGAATTGGAAGTGTTCGGAGTCGTCTT CTCCGGGGAAAAACTGAAGCAGCTCTCCACCGAAATCATCAACCATCAGTTGTTCGTCAATCGGGAAGGATTCATGGTTATGTACTTCAACATTGGCGCC CCAAACATGTACCTCAACCATCAGGGACACAAAAGCCTCCTCCGCCGCCTCAACGATTTGTTCGATTGGTCAAAGTACGGGGTCAATGTTCCGATCCCGG TGGAGACTGCGTGGGGGCGATTCCAGTTGAACACGGGGAAGCTGATGGTGGACGGTAAAATCGACGGGAAGAAGGTGGAGGAGCTGAATAAGCTGCTGGA AGAGAAGGAGAAGGAGAATCAGAAGCTCAAGGAGAAATTAGAGGGGCAGGATGATGAGAGCATTTCGCTGGCGGAGCTGTTGAAGGAGAAGGACGAGCTG ATTCAGAGGCAGAATAAGGATCTGGAAGAGAGGGATAATGAGTTGAGTGAGATTAAGAAAGTTGTCAAGGAGAAGGAGCAAGAGATTGCCGATTTGAAGT CGAAGCTGGCGGCTAGCAGTGGTGGTGGTAATTCTGATGAGTTGCAGAAGCTGAAGGATGACGTTGCTGCTAAAGATAGGCAGATCAAAGCTCTTAAGGC TGCTATGCAAGCCTTGATCAACTGA
AA sequence Show only first row Show all	>Lus10041676 pacid=23146918 polypeptide=Lus10041676 locus=Lus10041676.g ID=Lus10041676.BGIv1.0 annot-version=v1.0 MASRVVLNSNNQWLVAVSDRTIIVTDPGRDLNTHNLPTTIEQWRQVARVGSNNASTHRELEVFGVVFSGEKLKQLSTEIINHQLFVNREGFMVMYFNIGA PNMYLNHQGHKSLLRRLNDLFDWSKYGVNVPIPVETAWGRFQLNTGKLMVDGKIDGKKVEELNKLLEEKEKENQKLKEKLEGQDDESISLAELLKEKDEL IQRQNKDLEERDNELSEIKKVVKEKEQEIADLKSKLAASSGGGNSDELQKLKDDVAAKDRQIKALKAAMQALIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041676 [exp]	0	1
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10024030 [exp]	2.8	0.9659
AT5G10530			Concanavalin A-like lectin pro...		Lus10014652 [exp]	5.5	0.9401
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	5.8	0.9630
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	6.7	0.9621
AT5G61820			unknown protein		Lus10017315 [exp]	8.5	0.9552
AT5G61820			unknown protein		Lus10017316 [exp]	10.1	0.9524
					Lus10025421 [exp]	10.2	0.9422
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	11.2	0.9511
AT3G47570			Leucine-rich repeat protein ki...		Lus10020140 [exp]	13.5	0.9478
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Lus10015514 [exp]	15.4	0.9451

Compare expression of checked genes

Lus10041676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.