Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041676 [exp] 377 / 1e-132 ND / Lus10018646 [exp] 202 / 2e-65 ND / Lus10028987 [exp] 183 / 6e-57 ND / Lus10010387 [exp] 160 / 3e-49 ND / Lus10026135 [exp] 81 / 2e-17 ND / Lus10008678 [exp] 73 / 2e-14 ND / Lus10035524 [exp] 69 / 7e-14 ND / Lus10033372 [exp] 67 / 1e-12 ND / Lus10033373 [exp] 64 / 8e-12 ND 64 / 3e-13
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041677 pacid=23146807 polypeptide=Lus10041677 locus=Lus10041677.g ID=Lus10041677.BGIv1.0 annot-version=v1.0 ATGGGATCCAAGCGCATTGTGTTGAACTCCAACAACCTATGGCTCCTCCCATGGAGCGACCGCATCATCGGCGTCATGGATCCGGGTCGGGATCTGAATA CCCACGACGTCCCTCGCAACGTGGAAGATTGGCGGCAGCTGGGGCTGGTCGGATCCAACGCCAGATCCACCCACCGCGAACTGGAGGTCTTCGGCGTCGT CATCTCCGGGAAGAAGCTGGAGGAGCTCTCCACGGAGCTCATCAACCACCAGTGCATCGTCAATCGGGAAGGGTTCTTGATCATGTACTTCAACATCGGC GCCGGAAACATGTACCTCAAGAAGCAGTCGAGCGTCATGCGCCGCCTCAACGATCTGTTTGATTGGTCCAAGTACGGGGTCAACGTTCCGATTCCGGTGG AGACTGCTTGGGGGCGATTCCAATTGAACACAGGGAGGCTGATGGTGGACGGTAAAGTGGACGGGAAGAAGGTGGAGGAGCTGAAGAAGCTTCTGGAAGA GAAGGAGAAGGAGAATCAGAAGCTCAAGGAGAAATTAGATGGGCAGGACGATGAGAGTATTTCACTGGCGGAGCTGTTGAAGGAGAAGGATGAGTTGATT CAGGGGCAGAATAAGGATCTGGAAGAGAGGGATAATGAACTGAGTGTGATTAACAAATCTGTCAAGGAGAAGGAGAAAGAGATTGCCGATTTGAAGTCCA AACTTGCTGCTAGCAGTGGTGGTAATTCTGATGAGTTGCAGAAGCTGAAGGATGAAGTGGCTGCTAAAGATAGGCAGATCAAAGCTCTTAAGGCTGCTAT GCAAGCCTTGATCAACTGA
AA sequence Show only first row Show all	>Lus10041677 pacid=23146807 polypeptide=Lus10041677 locus=Lus10041677.g ID=Lus10041677.BGIv1.0 annot-version=v1.0 MGSKRIVLNSNNLWLLPWSDRIIGVMDPGRDLNTHDVPRNVEDWRQLGLVGSNARSTHRELEVFGVVISGKKLEELSTELINHQCIVNREGFLIMYFNIG AGNMYLKKQSSVMRRLNDLFDWSKYGVNVPIPVETAWGRFQLNTGRLMVDGKVDGKKVEELKKLLEEKEKENQKLKEKLDGQDDESISLAELLKEKDELI QGQNKDLEERDNELSVINKSVKEKEKEIADLKSKLAASSGGNSDELQKLKDEVAAKDRQIKALKAAMQALIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041677 [exp]	0	1
AT4G33925		SSN2	suppressor of sni1 2, unknown ...		Lus10019878 [exp]	2.4	0.8918
AT5G65980			Auxin efflux carrier family pr...		Lus10001303 [exp]	4.0	0.8820
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039550 [exp]	6.0	0.8873
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	6.9	0.8911
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	8.8	0.8636
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	10.4	0.8672
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10032965 [exp]	11.0	0.8443
					Lus10001855 [exp]	11.2	0.7911
AT1G72510			Protein of unknown function (D...		Lus10008118 [exp]	13.3	0.8495
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	13.4	0.8675

Compare expression of checked genes

Lus10041677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.