Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64870 238 / 5e-77 unknown protein AT3G45200 234 / 6e-76 unknown protein AT5G11220 205 / 9e-65 unknown protein AT1G49290 124 / 6e-33 unknown protein AT5G13620 117 / 1e-30 unknown protein AT5G24355 80 / 2e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002022 [exp] 501 / 2e-180 AT1G64870 241 / 3e-78 unknown protein Lus10009296 [exp] 453 / 6e-162 AT1G64870 235 / 3e-76 unknown protein Lus10002905 [exp] 114 / 2e-28 AT5G11200 423 / 5e-145 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10021560 [exp] 106 / 2e-26 AT1G49290 125 / 4e-33 unknown protein Lus10017168 [exp] 99 / 2e-23 AT5G13620 125 / 6e-33 unknown protein Lus10041424 [exp] 68 / 7e-13 AT1G49290 90 / 7e-21 unknown protein Lus10036502 [exp] 64 / 3e-12 AT1G49290 84 / 1e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G252800 [exp] 297 / 1e-100 AT1G64870 261 / 6e-87 unknown protein Potri.008G045000 [exp] 154 / 8e-44 AT5G13620 172 / 9e-51 unknown protein Potri.010G216400 [exp] 142 / 2e-39 AT1G64870 167 / 3e-49 unknown protein Potri.001G155600 [exp] 93 / 1e-21 AT5G13620 92 / 3e-21 unknown protein Potri.014G054900 [exp] 84 / 2e-18 AT1G64870 91 / 4e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041678 pacid=23146599 polypeptide=Lus10041678 locus=Lus10041678.g ID=Lus10041678.BGIv1.0 annot-version=v1.0 ATGGAATCCTCGACAATCACACAAGAGCAGTTACACATGTTTCACTCCATCGATCGAGAAGTATTTTTCTGTATGGTGATAAACCTTATGCGTGACCCAG GCGAGTCCTTGATCGTCGTAGCCGCCTGGTTATGGTTGGAGCAAATTGGCTACCCTAACATCATCATCTTGATGACATGCCTCTCTAACGCTGCCATTGA TATCCTTTCTGGAGAGATGGCAGCGACAATAGCCACTCTCCAATACTCCCCAGCAGATCTTTTGACCTTCTTGCCCAATGGTGGTAGGTTAATGTCCGCC ACCTCAGCGATCATGTCCCGAAACATCACTGTCGAGGTCTTTCACCGTCAACGCTTCACTGCCATTGCCGGAATAAAGAACTTCCTCAGCACAGTCTGCG CTCGAGTGTTTGGCGACATCTTACAACCCATCTGCCATGTATCGAATTATACTGGGGAGCTAGGGACTGGCCATCTGGTGATTCCTGGATTCCCCCACCC TTTATTTGGGGGCGCGACCATCACACCCCCAATATATAGACCCCGCTACCAGTTGGGACGGAACAGAGTCGACGGTTCCGTTCCTACAGGAGGGTTGTGG GCGTGGAGACCCACCAACACCGCCACCGAGGATGACAAGACGTTGTTCCTAACGTTCTCAAGGGGATTCCCAGTGACCAAGGATGAGGTGGTGAAACTCT TCACGCGGAAGTACGGGGAGGGAAGCGTGGTCGGAGTCATGATGCAGGAGAATGTGGTAGCTAGTGGAGACCAACAACCGTTGTTTGCGAAGATGATGCT CAGTTCAGTTGCTGTGGTTGATCGGGTGCTTGGTGGTGGTAGGATTGCCAAGTTCCGGATCAACGGAAAACACATATGGGCTCGGAGGTATGAGAGGAGG GAACAAACGTCGATGACGGCCATTCCACCTCCGCATGTGTAA
AA sequence Show only first row Show all	>Lus10041678 pacid=23146599 polypeptide=Lus10041678 locus=Lus10041678.g ID=Lus10041678.BGIv1.0 annot-version=v1.0 MESSTITQEQLHMFHSIDREVFFCMVINLMRDPGESLIVVAAWLWLEQIGYPNIIILMTCLSNAAIDILSGEMAATIATLQYSPADLLTFLPNGGRLMSA TSAIMSRNITVEVFHRQRFTAIAGIKNFLSTVCARVFGDILQPICHVSNYTGELGTGHLVIPGFPHPLFGGATITPPIYRPRYQLGRNRVDGSVPTGGLW AWRPTNTATEDDKTLFLTFSRGFPVTKDEVVKLFTRKYGEGSVVGVMMQENVVASGDQQPLFAKMMLSSVAVVDRVLGGGRIAKFRINGKHIWARRYERR EQTSMTAIPPPHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64870			unknown protein		Lus10041678 [exp]	0	1
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	1.7	0.9675
					Lus10010306 [exp]	2.4	0.9524
					Lus10002237 [exp]	2.8	0.9577
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	5.5	0.9312
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	6.0	0.9285
					Lus10015230 [exp]	6.9	0.9355
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10018545 [exp]	7.5	0.7730
AT1G62935			unknown protein		Lus10009297 [exp]	9.9	0.8871
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10043203 [exp]	11.8	0.8149
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	17.6	0.8305

Compare expression of checked genes

Lus10041678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.