Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 399 / 6e-131 S-locus lectin protein kinase family protein (.1) AT1G61380 362 / 2e-116 SD1-29 S-domain-1 29 (.1) AT4G23180 353 / 1e-114 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT1G61490 351 / 2e-112 S-locus lectin protein kinase family protein (.1) AT1G11330 349 / 2e-111 S-locus lectin protein kinase family protein (.1.2) AT4G23230 334 / 3e-109 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G23240 329 / 3e-109 CRK16 cysteine-rich RLK (RECEPTOR-like protein kinase) 16 (.1) AT4G23140 338 / 1e-108 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G11530 337 / 1e-108 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G21390 340 / 6e-108 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024064 [exp] 585 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 452 / 2e-151 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007611 [exp] 433 / 1e-143 AT1G11340 751 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 425 / 4e-143 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 403 / 2e-132 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007601 [exp] 398 / 2e-131 AT1G11340 501 / 3e-166 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 369 / 1e-118 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 364 / 4e-117 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 377 / 4e-116 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036400 [exp] 546 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 546 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 546 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 541 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 477 / 7e-161 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414000 [exp] 428 / 6e-142 AT4G27290 766 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411700 [exp] 419 / 2e-138 AT4G27290 800 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125301 [exp] 419 / 4e-138 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035850 [exp] 402 / 2e-137 AT4G23270 397 / 6e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) Potri.010G017450 [exp] 404 / 8e-133 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10041679 pacid=23146891 polypeptide=Lus10041679 locus=Lus10041679.g ID=Lus10041679.BGIv1.0 annot-version=v1.0 ATGAAGGCCAGTGGAACGAGTACTGGTCGGCACCTTAAGTACAGATGTGATACTTACGGGCAGTGTGGCGTTTACAGCATATGTGACCCTAACAATGTCA ATATGTTTGAATGCACTTGTTTACCTGGTTATGAACCTAGGACTCCGGGTACTTGGCGTCTTAGGGACGGGTCTGGCGGCTGTGTTAGAAAACGACTAGA AGAAACATCAAGCTTCTGTCAACCTGGAGAAGGGTTTTTGAGAGTGGTTGATATCAAGATTCCTGACACTTCTTCTGCCGTTTGGGTAAGCAGGAGTATG AGTCAAGTCGCATGTGAAGAAGCTTGCAGACGAAACTGTTCCTGCTCTGCTTATTCAATCAAGTCCATAGAAGGAAAACAAAGTGGCTGTTTGGCATGGT ATGGGGAACTAAATGACACAGTTGTTTTTAAGGACAGTGGCGATGATCTGTTTGTAAGAGTTGATGCACGTGAATTGGCTGATAACATGAGAAAATTTTC TGGTGATGTTGAGGTGAAGGTTAAGCTGGCAATTTTGCTGTACCATCTGTTACTTCAGTCTTGCTTGCCATGTCGATATTTGGCTATTTCAGGCTCAGGA GGTGGAAACGGGAGAAAGGGTCAGCTCTCTAATGGGCAAGAGGTGGCTGTGAAAAGACTATCCAAAAGTTCAGGTCAAGGGATCCAAGAACTTAAGAATG AAGTGTTGTGGATAGCCAGGCTGCAACACAGAAACCTTGTGAAGCTTCTCGGGTGCTGCATTGAGGATGACGAACAGATACTTGTTTATGAGTACGTACC AAACAAAAGCTTGGACTCCTTTATTTTTGATGAAACAAAGAGACCATTGTTGGATTGGGGAACACGCTTCAATATCCTTGTGGGTATCGCTCGTGGGATC TTATATCTTCATCAAGACTCAAAATTCAGAATAATACATAGAGATCTGAAAAGCAGTAACATTCTCTTGGATGAGATGATGAACCCTAAAATCTCAGACT TTGGCTTGGCTAAGATGTTCCATTGTGAGCAGATGCAAAACAAGACGACCAGAGTTGTCGGGACATATGGCTACATGTCACCAGAATATGCAGTATTCGG GAAATTTTCGGTGAAATCTGATGTTTTTACCTTTGGGATCGTACTCCTTGAGGTATTTAGTGGCAAGAAGATCAATAGCTTTTCGCAGGAGGTACCTCCC CGGACATTGATAGGACATATATGGGGACTATGGAGAGAGAACAGAGTGCTGGAGTTGATGGATCCTTCGGTGAAGGAGTCTTGTGTTCCCGAGGAAGCAC TGCGTTGCGTCCATGTTGGACTGTTATGTGTTCAGGAAGATGCAGCAGATAGGCCAAACATGTCAGCTATTGTGTTGATGTTGACGAGTGAGACGCCTCT TCCACGGCCGAAAAACCCAGCTTTTGTTTTCAGAGTCGTCGGTTCCAAGTTGGTAATGGCAGGTGGTGCGGATGAACCTTGTTCCATTAACGACTTGACT CTAACCGGGGTCTTGTCGCGGTGA
AA sequence Show only first row Show all	>Lus10041679 pacid=23146891 polypeptide=Lus10041679 locus=Lus10041679.g ID=Lus10041679.BGIv1.0 annot-version=v1.0 MKASGTSTGRHLKYRCDTYGQCGVYSICDPNNVNMFECTCLPGYEPRTPGTWRLRDGSGGCVRKRLEETSSFCQPGEGFLRVVDIKIPDTSSAVWVSRSM SQVACEEACRRNCSCSAYSIKSIEGKQSGCLAWYGELNDTVVFKDSGDDLFVRVDARELADNMRKFSGDVEVKVKLAILLYHLLLQSCLPCRYLAISGSG GGNGRKGQLSNGQEVAVKRLSKSSGQGIQELKNEVLWIARLQHRNLVKLLGCCIEDDEQILVYEYVPNKSLDSFIFDETKRPLLDWGTRFNILVGIARGI LYLHQDSKFRIIHRDLKSSNILLDEMMNPKISDFGLAKMFHCEQMQNKTTRVVGTYGYMSPEYAVFGKFSVKSDVFTFGIVLLEVFSGKKINSFSQEVPP RTLIGHIWGLWRENRVLELMDPSVKESCVPEEALRCVHVGLLCVQEDAADRPNMSAIVLMLTSETPLPRPKNPAFVFRVVGSKLVMAGGADEPCSINDLT LTGVLSR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10041679 [exp]	0	1
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10036800 [exp]	4.8	0.9497
					Lus10032742 [exp]	7.7	0.9492
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10000173 [exp]	13.7	0.9486
AT1G72390			unknown protein		Lus10013170 [exp]	15.4	0.9325
AT4G14746			unknown protein		Lus10039368 [exp]	18.2	0.9365
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10037131 [exp]	19.8	0.9171
					Lus10011653 [exp]	19.9	0.9416
AT2G41480			Peroxidase superfamily protein...		Lus10012684 [exp]	20.1	0.9207
AT4G39830			Cupredoxin superfamily protein...		Lus10016808 [exp]	21.0	0.9314
					Lus10022008 [exp]	25.3	0.9368

Compare expression of checked genes

Lus10041679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.