Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15520 948 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT1G66950 832 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 823 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT2G26910 811 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT1G15210 804 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT3G16340 801 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G59870 796 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT2G29940 767 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G30842 719 / 0 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT2G37280 682 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024062 [exp] 1480 / 0 AT1G15520 1820 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 967 / 0 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 960 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 950 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 927 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 917 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 864 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041680 [exp] 862 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024063 [exp] 841 / 0 AT1G15520 1623 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G049000 [exp] 1018 / 0 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 1012 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 1006 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 995 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 994 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 990 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 988 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 975 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 956 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 956 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10041681 pacid=23146899 polypeptide=Lus10041681 locus=Lus10041681.g ID=Lus10041681.BGIv1.0 annot-version=v1.0 ATGTCGTCTGCGCTGTTCCGATTCCTTGCAGCCATTGGAAGGAATCAGATAGTTGCTAGCACCCTCAGTTCTTTCATACTTCTGGTGCTCATGACACTGA GTGGATTTGTGCTGTCAAGAGATAGCATCAACAAGTTTTGGATATGGATATTCTGGATATCTCCTTTCATGTATGCTGACAATGCCATCTTGGTTAATGA GTTCCTTGGTGACAACTGGAGCCAAGTTTCTTCGGGCAGCAACGAGACACTAGGAATGCAAGTTCTCAACTTCCGAGGCTTCTTCACCGATCCCAATTGG TATTGGATAGGAATAGGAGCATTGTTTGGGTTCACTATTGTGTTCAACCTTGGTTTTGCTCTAGCTCTCACTTACCTCAACCCATTTGACAAGCCTCAAG CATTAATTTCTAAAGAAACTAACAGTGATGATGAAGCTTATGAGGCTAGTATGAGAGCTGGCACATTATCATTCCAAAGAAGTTTCAATGAAACGCATAA TGAGAGTGACGACGACTCTAGCTCGGGCAATTCTTATCCAGGAATGGAGATGACTTCTGGTACTAACAATGGAAAGAAGAAAGGAATGGTTCTTCCATTC GAACCATATTCCATCACCTTTGATGAAATAACTTACGCTGTTGATGCTCCCCAGCACATGAAAGAGAAAGGCATGGTTAAGGACAAATTGTATCTTCTAA AAGGAGTGAGTGGAGCTTTTAGGCCTGGAGTTCTCACTGCTTTAATGGGAGTAACTGGTGCTGGCAAAACCACACTCATGGATGTGCTAGCGGGTAGAAA AAATCATGGGTATACTCAGGGAACCATTACCATTTCCGGATTCCCCAAAAACCAAGACACGTTTGCTAGAATTGCCGGATACTGCGAACAAAACGACATT CATTCTCCATTTGTAACTGTCCATGAATCTTTGCTCTATTCAGCTTGGCTTCGTCTCTCAACTGAAGTTAACAGTCAAACCAGGAAAATGTTTGTGGAAG AAGTAATGGCACTCGTGGAGCTTGATAACCTGAGGCATTCCATAGTTGGGTTGCCTGGTGTAAATGGTTTGTCGACTGAGCAAAGAAAGCGATTAACGAT TGCAGTAGAACTGGTGGCGAACCCTTCCATCATATTCATGGATGAGCCAACTTCAGGGTTGGATGCTAGAGCTGCTGCAATTGTCATGAGAACAGTGAGA AACACAGTGGACACTGGTAGAACCGTGGTTTGCACCATCCATCAGCCAAGCATTGATATCTTTGAGTCTTTTGACGAGGCGGTTGAAGGAGTCTGTAAGA TCAAAGATGGGTATAACCCTGCAACTTGGATGATGGAAGTATCCACACCTGGGCAAGAGGCCACTCTGGGAGTTGATTTTGCTGGCCTGTACAGGAAATC AGACCTTTACAAGAGAAACAAGGCACTGATCCAGGAACTGAGCAAACCATTAGCTGGCTCCAAAGACTTGTACTTCTCAACAAAATTCTCCAGATCAATC TTCACTCAATGCCTAGCCTGCCTGTGGAAGTTTCATCTATCCTACTGGCGAAACCAGCCTTACACAGGCGTCCGATTTCTCTTTACAACAATCATAGCCT TGTTGTTTGGTGGCATGTTCTATGATCTTGGTGGCAGATTAAATGGTTATCAGAATCTAACCATGAATTCTAAAATCCACACCAGTGACAATGAACAAGA CCTATTCAATGCAATTGGGTCAATGTTCACAGCAGTGTTCTCAATTGGAATCCAAAACGCATCGACAGTGCAGCCAGTTGTGGACATTGAAAGAACTGTT TTCTACAGAGAAAGAGCTGCTGGAATGTATGCAGCTTTCCCTTATGCAGTTGGCCATGTATTGATTGAACTTCCGTACATTTTGCTGCAATCAGTGCTGT ACAGCTCCATAGTCTACATAATGATAGGATTCGAACTAACATTGATAAAGTGCTTCTGGTTTGTGTTCTTCATGTACTTCACCCTACTCTACTTCACGTT CTATGGCATGATGGCAGTCTCCTTCACCCCAAACCAACACATTGGCTACATTGTCTCCACTGCTTTCTACGGACTCTGGAACATCTTTGCTGGATTCATC ATCCCACGACCCAGGGCGCCAATCTGGTGGAGATGGTACTATTATGCATGCCCAGTTTCGTGGACACTGTACGGGTTCGTGGCGTCTCAGTATGGAGACT TGAAGAACATCCTGATGAGTGGGCTGACTGTGGAGTCATTTATAGAGCTCTACTTTGGATTCGAACATGACATGGTTCCGTTTGTTGGTGTAGTGGTGGT TGGGTTTGGAGTGCTCTTCATCCTGATTTTCGCAACCTGTATTATGATGCTCAATTTCCAGAGGAAATGA
AA sequence Show only first row Show all	>Lus10041681 pacid=23146899 polypeptide=Lus10041681 locus=Lus10041681.g ID=Lus10041681.BGIv1.0 annot-version=v1.0 MSSALFRFLAAIGRNQIVASTLSSFILLVLMTLSGFVLSRDSINKFWIWIFWISPFMYADNAILVNEFLGDNWSQVSSGSNETLGMQVLNFRGFFTDPNW YWIGIGALFGFTIVFNLGFALALTYLNPFDKPQALISKETNSDDEAYEASMRAGTLSFQRSFNETHNESDDDSSSGNSYPGMEMTSGTNNGKKKGMVLPF EPYSITFDEITYAVDAPQHMKEKGMVKDKLYLLKGVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKNHGYTQGTITISGFPKNQDTFARIAGYCEQNDI HSPFVTVHESLLYSAWLRLSTEVNSQTRKMFVEEVMALVELDNLRHSIVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR NTVDTGRTVVCTIHQPSIDIFESFDEAVEGVCKIKDGYNPATWMMEVSTPGQEATLGVDFAGLYRKSDLYKRNKALIQELSKPLAGSKDLYFSTKFSRSI FTQCLACLWKFHLSYWRNQPYTGVRFLFTTIIALLFGGMFYDLGGRLNGYQNLTMNSKIHTSDNEQDLFNAIGSMFTAVFSIGIQNASTVQPVVDIERTV FYRERAAGMYAAFPYAVGHVLIELPYILLQSVLYSSIVYIMIGFELTLIKCFWFVFFMYFTLLYFTFYGMMAVSFTPNQHIGYIVSTAFYGLWNIFAGFI IPRPRAPIWWRWYYYACPVSWTLYGFVASQYGDLKNILMSGLTVESFIELYFGFEHDMVPFVGVVVVGFGVLFILIFATCIMMLNFQRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041681 [exp]	0	1
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	14.3	0.9424
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035188 [exp]	15.8	0.8495
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	20.9	0.9355
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	25.4	0.9228
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	25.9	0.9338
AT2G24180		CYP71B6	cytochrome p450 71b6 (.1)		Lus10017697 [exp]	29.9	0.9327
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020469 [exp]	30.3	0.9286
AT1G07750			RmlC-like cupins superfamily p...		Lus10015219 [exp]	30.4	0.8920
AT4G35783		RTFL6, DVL17	DEVIL 17, ROTUNDIFOLIA like 6 ...		Lus10028393 [exp]	33.7	0.9299
					Lus10020564 [exp]	33.9	0.9212

Compare expression of checked genes

Lus10041681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.