Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15520 325 / 1e-98 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT1G66950 324 / 4e-98 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 317 / 2e-95 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT4G15215 306 / 1e-91 ABCG41, PDR13, ATPDR13 ATP-binding cassette G41, pleiotropic drug resistance 13 (.1) AT2G26910 295 / 6e-88 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT3G30842 295 / 9e-88 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT4G15233 291 / 1e-86 ABCG42 ATP-binding cassette G42, ABC-2 and Plant PDR ABC-type transporter family protein (.1.2) AT1G15210 290 / 7e-86 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G59870 289 / 9e-86 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT3G16340 282 / 2e-83 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024062 [exp] 549 / 0 AT1G15520 1820 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041685 [exp] 534 / 0 AT1G15520 1271 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 534 / 1e-176 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 523 / 2e-172 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 522 / 9e-172 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 442 / 2e-141 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 418 / 7e-133 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008984 [exp] 404 / 3e-127 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10024063 [exp] 352 / 2e-107 AT1G15520 1623 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G183200 [exp] 442 / 2e-141 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 412 / 3e-130 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 350 / 2e-107 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 348 / 7e-107 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 348 / 1e-106 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 347 / 2e-106 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 347 / 3e-106 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G049000 [exp] 343 / 5e-106 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 346 / 6e-106 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 336 / 2e-102 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Lus10041682 pacid=23146825 polypeptide=Lus10041682 locus=Lus10041682.g ID=Lus10041682.BGIv1.0 annot-version=v1.0 ATGGTGGGTGAATATGGTGCAGATTCGGGTAAAGCAACACCCAACAACTCTTCCATATGGAGCAACGACACGAGCGCAGTTGGCGCCATGTCGATAATGG ACGACGATGACAAGAAGGCTCTGCGACGAGGCAAGAGGAAAGTAGGTGCTATTGGCAAGAGTGGCGAGTTGAGTCTCCATAACCTTGGCCTCCAAGAAAG AAGAGCCTTGGTTGACAGCTTAGTCAAAGTTCCTGAGATTGACAATGAGAAGTTCTTGCACAAGTTCAGGAGCCGAATCGACAAGGTTGGGATCGAGCTT CCGACGATTGAAGTACGGTTCCAGAATCTTACAGTGGAGGCGGAAGCTCGGTCTGCGGGTAGAGCTTTGCCTACCATGTATAATTTTGCAGTCAACTTCC TGGAGGGTTTGCTGAGTTCTCTTCATATCCTATCAAACAGAAATCAGAAACTAACGATCCTGAAAGGTGTTAGTGGAGTGATCAAGCCATCCAGGATGAC ACTGCTACTTGGTCCTCCTAGTTCTGGCAAGACAACCTTTCTACTGGCTTTGGCTGGCCAGCTTGACCCTGATCTTAAGTGCAATGGGTGTGTAAGCTAC AACGGATACAAAATGAAGGAGTTTGTGCCACAGAGGACTGCTGCCTACATCAGCCAAAATGATAATCATATTGCAGAAATGACAGTCAGAGAAACTCTGG CCTTTTCTGCCAGATGCCAGGGTGTCGGGTTTTTAAGTGAGATGCTGGCCGAACTGTTGAAGAGAGAAAAGGCTTCACACATTAAGCCGGACGCTGCCGT CGATCTCTATATGAAAATAGTGAATTCCATGAGACAGTCAACCCACATCCTTAAAGGAACTACAGTTATATCCTTGCTGCAGCCGCCTCCTGAGACTTAT GAACTCTTCGATGACATCATCCTCCTCTCCGATGGGCATGTCGTCTATCATGGCCCTCGTGACGGTATCCTCGACTTCTTTCAGCACATGGGCTTCAGGT GCCCTGACAGGAAATGTGTCGCTGATTTCCTTCAAGAAGTGACATCCAAGAACGACCAGAAACAGTACTGGGCGAGGAAAGAACAAAGTTACAGTTACGT AAGCGTGAGGGAATTCGCAGAATCGTTCAAGCAATTCACGGTGGGAGAAGGAATGAGGAAGGAACTGTCAAGGCCATTTGACAAGAACAAAGGCCATGCA GCTGCTTTGGCTTTCAGGAAGTACGGAATCTCAGAATGGGAGCTGCTCAAGGCTTGTCTCTCCAGGGAATTCCTTCTCATGAAGAAGAACTCCTTCGTCT TCATCTTCAAGGTCGTCCAGCTTACAATAATGGCACTGATTCTAATGACATTGTTCCCGAAGAGCCTGATGCATAGAGACACAGTGATTGATGGGGTTAT TTACATGGGGGCACTCTTCTTCATTGTGAGTATGATCATCTTCAACGGAATGGCGGATCTATCTATGACGGTTGCCAAGCTCCCTGTCTTCTATAAGCAG AGGAACTTTGGTTTCTATCCTCCATGGGCCTTCTCTCTTCCTCCATCTTTCCTTCTGCCCCAAAAACACTAA
AA sequence Show only first row Show all	>Lus10041682 pacid=23146825 polypeptide=Lus10041682 locus=Lus10041682.g ID=Lus10041682.BGIv1.0 annot-version=v1.0 MVGEYGADSGKATPNNSSIWSNDTSAVGAMSIMDDDDKKALRRGKRKVGAIGKSGELSLHNLGLQERRALVDSLVKVPEIDNEKFLHKFRSRIDKVGIEL PTIEVRFQNLTVEAEARSAGRALPTMYNFAVNFLEGLLSSLHILSNRNQKLTILKGVSGVIKPSRMTLLLGPPSSGKTTFLLALAGQLDPDLKCNGCVSY NGYKMKEFVPQRTAAYISQNDNHIAEMTVRETLAFSARCQGVGFLSEMLAELLKREKASHIKPDAAVDLYMKIVNSMRQSTHILKGTTVISLLQPPPETY ELFDDIILLSDGHVVYHGPRDGILDFFQHMGFRCPDRKCVADFLQEVTSKNDQKQYWARKEQSYSYVSVREFAESFKQFTVGEGMRKELSRPFDKNKGHA AALAFRKYGISEWELLKACLSREFLLMKKNSFVFIFKVVQLTIMALILMTLFPKSLMHRDTVIDGVIYMGALFFIVSMIIFNGMADLSMTVAKLPVFYKQ RNFGFYPPWAFSLPPSFLLPQKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041682 [exp]	0	1
					Lus10021990 [exp]	1.0	0.9993
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10007595 [exp]	1.7	0.8798
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024903 [exp]	6.9	0.8950
					Lus10026021 [exp]	7.1	0.8058
AT1G23980			RING/U-box superfamily protein...		Lus10022223 [exp]	7.5	0.7393
AT3G54200			Late embryogenesis abundant (L...		Lus10006764 [exp]	11.3	0.8140
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10006893 [exp]	12.6	0.8140
AT1G63640			P-loop nucleoside triphosphate...		Lus10009028 [exp]	13.9	0.8140
					Lus10009317 [exp]	15.0	0.8140
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	16.0	0.8140

Compare expression of checked genes

Lus10041682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.