Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15520 848 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT1G66950 739 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G26910 724 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT2G36380 721 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G59870 703 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT1G15210 701 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT3G16340 686 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT3G30842 678 / 0 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT2G29940 663 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G53480 617 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041683 [exp] 1020 / 0 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 976 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 949 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 848 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 827 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 807 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024062 [exp] 785 / 0 AT1G15520 1820 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10019453 [exp] 713 / 0 AT2G26910 2354 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Lus10025824 [exp] 712 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048900 [exp] 882 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 881 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 878 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G049000 [exp] 868 / 0 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 867 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 866 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 862 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 862 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 860 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 847 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10041684 pacid=23146619 polypeptide=Lus10041684 locus=Lus10041684.g ID=Lus10041684.BGIv1.0 annot-version=v1.0 ATGGATGTGCTGGCTGGAAGGAAAACCGGTGGCTACATTGAAGGAAACATCACAATCTCCGGATTCCCTAAGAAGCAAGAAACTTTTGCTAGGATTTCAG GGTATTGTGAGCAGAATGACATCCATTCTCCACAAGTCACTGTGTATGAATCTTTAGTATACTCAGCTTGGCTTCGTTTGCCCAAAGAAGTTGATGAGAA GACCAGAATGATGTTTGTTGAAGAAGTTATGGATCTTGTGGAGCTAAACCCGTTGCGTAATTCGCTGGTGGGACTCCCGGGTGTGAGTGGTTTGACAACC GAGCAAAGGAAGAGGTTGACCATTGCTGTCGAATTAGTAGCAAACCCGTCGATCATCTTCATGGATGAGCCAACCTCAGGATTGGATGCTAGAGCTGCTG CAATTGTCATGCGAACAGTGAGGAACACTGTGGACACTGGTAGAACTGTTGTTTGTACCATCCATCAGCCAAGTATTGACATCTTTGAAGCTTTTGATGA GTTGTTCTTGTTGAAGAGAGGAGGACAAGAGATATATGTCGGTCCATTGGGACGCCACTCTACTCATCTTGTCAAATACTTTGAGGAGATTGATGGAGTT AGCAAAATCACTGATGGATACAATCCAGCTACATGGATGCTGGAAGTCACTACCACAACTCAAGAAATAGCGATGGGAGTTGACTTTGCTGATATTTACA GGAACTCAGACCTCTACAAGAGAAATAAGGCATTGATTCAGGACTTGAGCAAGCCAGCCCCAGGAGCAAAAGAGCTATATTTCCCAACACAATACTCACA GACATTCTGGACACAATGCATGGCTTGCTTGTGGGAGCAGGATTGGTCTTACTGGCGTAATCCTCCCTACACTGCTGTCAGATTCTTGTTCACTACCTTC ATCGCTCTCATGTTCGGAACCATGTTCTGGGATCTTGGTGGCAAAACATCGAGACAACAAGACCTTTTCAACGCAATGGGAGCAATGTTCGCAGCAGTGC TCTTCCTCGGTGTCCAAAATGCATCATCAGTACAGCCCGTGGTAGCCATTGAAAGAACAGTGTTCTACCGAGAGCGAGCTGCAGGAATGTACTCAGCTTT GCCTTATGCCTACGCTCAGGTGGTGATTGAGCTTCCGTACATCCTGGCACAAGCAGTTGTGTACGGTGTGATCACATACGCAATGATTGGGTTCGAATGC GAGGCTGCAAAGTTCCTATGGTACATCTTCTTCATGTACTTCACCCTCCTCTACTTCACCTTTTACGGAATGATGACAGTCGCAATCACACCAAACCACC ACATTGCTGGCATCATCTCTTCCTTCTTTTACTCCATCTGGAACATATTCGCCGGATTCATCATCCCCAGACCTAGGATTCCGGTGTGGTGGAGATGGAA CTACTGGGCCGACCCGATCTCGTGGACATTGTACGGGCTGATTACTTCGCAGTTTGGAGATTTAAGGACCCGAATGGAGTCTGGAGAAGCTGTTGAAGAT TTCCTGAGGAATTACTTCGGGTTCAAGCATGATTTCCTGGGAGTTGTTGCTGCTGTTATGGTTGGATTAGCAGTTGTCTTTGCTCTGATCTTTGCCGTGT CAATCAAGTCTTTCAACTTCCAGAGAAGATGA
AA sequence Show only first row Show all	>Lus10041684 pacid=23146619 polypeptide=Lus10041684 locus=Lus10041684.g ID=Lus10041684.BGIv1.0 annot-version=v1.0 MDVLAGRKTGGYIEGNITISGFPKKQETFARISGYCEQNDIHSPQVTVYESLVYSAWLRLPKEVDEKTRMMFVEEVMDLVELNPLRNSLVGLPGVSGLTT EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLGRHSTHLVKYFEEIDGV SKITDGYNPATWMLEVTTTTQEIAMGVDFADIYRNSDLYKRNKALIQDLSKPAPGAKELYFPTQYSQTFWTQCMACLWEQDWSYWRNPPYTAVRFLFTTF IALMFGTMFWDLGGKTSRQQDLFNAMGAMFAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSALPYAYAQVVIELPYILAQAVVYGVITYAMIGFEC EAAKFLWYIFFMYFTLLYFTFYGMMTVAITPNHHIAGIISSFFYSIWNIFAGFIIPRPRIPVWWRWNYWADPISWTLYGLITSQFGDLRTRMESGEAVED FLRNYFGFKHDFLGVVAAVMVGLAVVFALIFAVSIKSFNFQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041684 [exp]	0	1
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10014146 [exp]	8.2	0.9686
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10040509 [exp]	11.5	0.9664
AT5G01750			Protein of unknown function (D...		Lus10025253 [exp]	13.7	0.9651
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	18.3	0.9655
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001762 [exp]	19.7	0.9315
AT5G59100			Subtilisin-like serine endopep...		Lus10004686 [exp]	19.8	0.9635
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10009351 [exp]	20.3	0.9637
					Lus10000858 [exp]	22.1	0.9645
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	23.2	0.9625
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10033406 [exp]	24.4	0.9425

Compare expression of checked genes

Lus10041684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.