Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023062 [exp] 70 / 8e-14 AT4G02210 67 / 4e-12 unknown protein Lus10032996 [exp] 62 / 5e-11 AT4G02210 49 / 2e-06 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041686 pacid=23146854 polypeptide=Lus10041686 locus=Lus10041686.g ID=Lus10041686.BGIv1.0 annot-version=v1.0 ATGGCTAGGCGTCCTCTTACACTGAAGGAAAGGCAGAAGGTAATTCGAACTGCCCTTGCCCTGTGGTTTCAGATGGTGCAACAGTACATGATGTTCTTGT CGAACATGGAAGTGGCCCTATCCTTGATAGAGAACAATCTTAGTGAGGATCCTGTTGAGGAAGGGGAGTCATCTTCAGGGCAGAAGCGGACAGAAGACTT CTTTGCCTCCATTAAACTGGCAATGGATAGCATCCACGAGAACATAACGAAGACGACTAAAAACATAGAGCGGTTGACAAACAGTCTACCCAAAGATGTT GCTAGAAAGAGAGAGTACATGGTTGACAAACTCAATCACTTGCCAGGTATTTCATACACCCTATGTGTCAAAGCGATCAGGATGTTAAAGAAGGATCATG CTGATTTGGAAACCTTCATTATGATGCCGGACGACCAGACGAAGGCTGTTCATAAATGCAAGCTGCGAGCGATCATATCCAGAAGTAGCCCTTCTCGTCT CATGACTTCGTCTATCTCCCCATTTGGTGTTGTGGTTGGTTTTAAATGGACAAGAACAAGGCAATGTGGGAAGGCTGAAGAAGAAAGGAGATGCAAAAGC AGCAACGTGGATAACGAGAAAGGAAAAGGCCATATGGGTCCAAGATATTACATATTTTTTCCCCTCGAATATCAAACTCATACGACAGTGAAATATCTCG AATAA
AA sequence Show only first row Show all	>Lus10041686 pacid=23146854 polypeptide=Lus10041686 locus=Lus10041686.g ID=Lus10041686.BGIv1.0 annot-version=v1.0 MARRPLTLKERQKVIRTALALWFQMVQQYMMFLSNMEVALSLIENNLSEDPVEEGESSSGQKRTEDFFASIKLAMDSIHENITKTTKNIERLTNSLPKDV ARKREYMVDKLNHLPGISYTLCVKAIRMLKKDHADLETFIMMPDDQTKAVHKCKLRAIISRSSPSRLMTSSISPFGVVVGFKWTRTRQCGKAEEERRCKS SNVDNEKGKGHMGPRYYIFFPLEYQTHTTVKYLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041686 [exp]	0	1
AT3G07310			Protein of unknown function (D...		Lus10002342 [exp]	5.7	0.9592
AT5G44390			FAD-binding Berberine family p...		Lus10038442 [exp]	7.2	0.9547
AT1G11050			Protein kinase superfamily pro...		Lus10028554 [exp]	8.5	0.9356
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10005149 [exp]	10.4	0.9021
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10022756 [exp]	12.4	0.9524
AT2G43590			Chitinase family protein (.1)		Lus10003587 [exp]	13.2	0.9475
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10025903 [exp]	13.5	0.9435
AT2G33420			Protein of unknown function (D...		Lus10011785 [exp]	15.1	0.9389
					Lus10020455 [exp]	15.5	0.9497
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034385 [exp]	20.4	0.9436

Compare expression of checked genes

Lus10041686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.