Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15760 141 / 4e-42 Sterile alpha motif (SAM) domain-containing protein (.1) AT1G80520 132 / 1e-38 Sterile alpha motif (SAM) domain-containing protein (.1) AT2G12462 96 / 5e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024059 [exp] 334 / 1e-117 AT1G80520 151 / 5e-46 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10001679 [exp] 112 / 4e-30 AT2G12462 136 / 5e-39 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012100 [exp] 162 / 3e-50 AT1G15760 204 / 3e-67 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.001G204600 [exp] 160 / 1e-49 AT1G15760 202 / 2e-66 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.006G061400 [exp] 118 / 2e-32 AT2G12462 180 / 3e-56 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [flax] [poplar] SAM PF07647 [flax] [poplar] SAM_2 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Lus10041687 pacid=23146699 polypeptide=Lus10041687 locus=Lus10041687.g ID=Lus10041687.BGIv1.0 annot-version=v1.0 ATGGATTGGTTCTCATGGCTGTCAAAGAGTGGACTTGATCCATCTCTAGTCTACGAATACGGTCTAGCCTTCTCCAACAACGAGCTAGAAGAAGAGGACA TAGCATACTTCAACCATGAGTTCCTTCAGAGCATGGGGATCTCGATTGCCAAGCACAGGCTCGAGATCTTGAAGCTCGCCAAGAAGGCTAAAATGGTAAG AAGTGAAGGAAAAAGGAAGAAGATTGTAAACACTAATTATAGTAGTACTCCACATGCCATGGATAGAGTTGTTGTAGCAATTAGGAGGAGGTTGACCAAG TTTCTAAAGGCGTTGACTAGACGAGATCAAGAGGATGATGATGGATCGGGGGCGGCCCTGGTTGTGGTTCCGAGGAGGATTATTGGTGGTGGCGGCGGGT ATGGAAGCAGTAGGTGGAGGAAGGAAGCTATGCTGAAGAGGAACATCAACAACATCAATAAGAACAATAAGAAGGTGATGATGGTGAACAAGTATAAACA GGATGAGAAGCTGATGATGCTGACTAATGGAAGCCCTATGATGATGTATGGAGCAGTGGAGAAGGTGATGGATGAACATGATGATGATGATCATGAACAT CAAGTGTACTATTGGTCAACTCCTGCTGCTGTTGAAGACATCAGGTGGGATGCAATGTTCCAGAATCTGAAACCTACTTGA
AA sequence Show only first row Show all	>Lus10041687 pacid=23146699 polypeptide=Lus10041687 locus=Lus10041687.g ID=Lus10041687.BGIv1.0 annot-version=v1.0 MDWFSWLSKSGLDPSLVYEYGLAFSNNELEEEDIAYFNHEFLQSMGISIAKHRLEILKLAKKAKMVRSEGKRKKIVNTNYSSTPHAMDRVVVAIRRRLTK FLKALTRRDQEDDDGSGAALVVVPRRIIGGGGGYGSSRWRKEAMLKRNINNINKNNKKVMMVNKYKQDEKLMMLTNGSPMMMYGAVEKVMDEHDDDDHEH QVYYWSTPAAVEDIRWDAMFQNLKPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15760			Sterile alpha motif (SAM) doma...		Lus10041687 [exp]	0	1
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	2.2	0.8166
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039506 [exp]	2.4	0.8296
AT4G17370			Oxidoreductase family protein ...		Lus10007490 [exp]	2.4	0.8131
AT2G46150			Late embryogenesis abundant (L...		Lus10017531 [exp]	3.2	0.8296
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10040669 [exp]	3.7	0.8358
AT1G80520			Sterile alpha motif (SAM) doma...		Lus10024059 [exp]	4.9	0.8194
					Lus10006569 [exp]	5.2	0.8020
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10025845 [exp]	9.8	0.7619
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10041918 [exp]	10.8	0.7890
AT5G10530			Concanavalin A-like lectin pro...		Lus10014648 [exp]	11.7	0.7761

Compare expression of checked genes

Lus10041687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.