Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39840 285 / 5e-91 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024058 [exp] 0 / 1 AT4G39840 158 / 9e-60 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G091900 [exp] 307 / 1e-99 AT4G39840 360 / 5e-121 unknown protein Potri.005G076500 [exp] 307 / 1e-99 AT4G39840 352 / 2e-117 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041688 pacid=23147032 polypeptide=Lus10041688 locus=Lus10041688.g ID=Lus10041688.BGIv1.0 annot-version=v1.0 ATGGCTACTCTTCGTCCTTCCAGCTTGAGGTTCAGAAACGCACTATTGCTCTGCCTATTCCTCTTCTTCTTCACTTCCCTCTTCCTCTCTTCTGCTGCTT CTTCTTCTTCATCCGACGATGATTTCGACGAGCAACCGCTTCCCAAGAAAAAATCCACCACCAGCACCACCAGTAGCAGCTTGTCAGCTACCAAGAACAA ACCCACCTCATCCTCCCAGCTTCTCAAATCTGATAGTAAGAAGAACCAAACCACCTCCAAGAAAACTTCCAGCACTGCTACTGATTCCCTTTCTTCTTCT TCTTCTGCTAAGAACCAAACAAAACTATTAAAAACCAGCAAAGCCTCCAATTCCACCCAATCTGCATCAACCACCAAGAGCAGTAATGATCTCAAGAAAA CTACTGCTGCTACTTCTGAGCTCAAGCTCAAGAAGAAGTCCACCAATTCTACTAATAACAGTACCTCTCCTCAGCTCGTTAAGCAGAAAGACAAGAAGCA ACTCAACTCCACTACCACCAAACCCAAATCCCTTAAAGATTCAGATCCAATCAAGCTATCATCATCATCATCAAGCTCTTCCAAGAACAAAACCACATCC AAATCACCCGCCGCTAAGAAATCCCAAACCCTAACCCCCAATTCAGATTCCACCGACAAGAAGAAGCAAATTATCAAGACAACGACAAAATCCGCCGCTT CCGTGACGACAAAAAAGCAGCCCCGAATTCCGTCGAGCTGGGTCGAGCCGGAAGACGAAGAGGAAGGAGACCTAGTGTCCGAGTTCAGAGATCTGCCATC CAAGTTCCAGCAGCATCTCATCCCCGATCTGGAAAGGATCTCGATGACTTCAAGAAAGTACCTGACTAAGGCCAACAAGGAAATGACGAGAGGATTCAAG CCGATCGTCGGCAACAAGTACGCCGCCACGACAGCGTCGGTGGTGTCATTCGCGTTCATCATCATCCCGCTCCTCCTCGTCTCCCTGATCGTGAACCGGA TCAAGGCCTATTTCTCCCTCCAGAAGCTCCTCATCTTCGTCCAGGTCTACCTCTCGATCTACTTCTCCATCCTCTGCCTCTCGTCTTTAGCCACGGGGCT GGAGCCGCTGCGGTTCTTCTACGCCAGCGCCGGAGCGACCTACTTCGGGATCATGCTCCTCCAGACATTGGCGTACCTCTTCTACCTCTTCCTCTTACTC GTCTACTTGGTGCTCGTGTTCTCCCCCTCCTCCGCGGCTACCTCCGCCGGGATGGGGACGAGGATGATGGGCCTGGCCCAGGTGTTGATGGGCTTCGCGA TTGGGGTCCACCTCTACGTGGCGGTTTTCCATAGGGTGTTGCTGCATCAACCGCCGAAGACAAACTGGAAGGTTCACGGGATCTACGCCGCGTGTTTTCT GCTTGTTTCTTTACTTGCCGGCGTTGAGAGGAGGAAGAAGGCCTACTTGGAAGAAGGCGGTGAAGAAGGCAAACTCAATTGA
AA sequence Show only first row Show all	>Lus10041688 pacid=23147032 polypeptide=Lus10041688 locus=Lus10041688.g ID=Lus10041688.BGIv1.0 annot-version=v1.0 MATLRPSSLRFRNALLLCLFLFFFTSLFLSSAASSSSSDDDFDEQPLPKKKSTTSTTSSSLSATKNKPTSSSQLLKSDSKKNQTTSKKTSSTATDSLSSS SSAKNQTKLLKTSKASNSTQSASTTKSSNDLKKTTAATSELKLKKKSTNSTNNSTSPQLVKQKDKKQLNSTTTKPKSLKDSDPIKLSSSSSSSSKNKTTS KSPAAKKSQTLTPNSDSTDKKKQIIKTTTKSAASVTTKKQPRIPSSWVEPEDEEEGDLVSEFRDLPSKFQQHLIPDLERISMTSRKYLTKANKEMTRGFK PIVGNKYAATTASVVSFAFIIIPLLLVSLIVNRIKAYFSLQKLLIFVQVYLSIYFSILCLSSLATGLEPLRFFYASAGATYFGIMLLQTLAYLFYLFLLL VYLVLVFSPSSAATSAGMGTRMMGLAQVLMGFAIGVHLYVAVFHRVLLHQPPKTNWKVHGIYAACFLLVSLLAGVERRKKAYLEEGGEEGKLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39840			unknown protein		Lus10041688 [exp]	0	1
AT2G20690			lumazine-binding family protei...		Lus10017000 [exp]	2.4	0.9002
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	2.6	0.9134
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10003967 [exp]	2.8	0.8941
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	4.2	0.9098
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10016140 [exp]	6.3	0.8649
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10034633 [exp]	6.8	0.8613
					Lus10007581 [exp]	7.9	0.8752
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10025538 [exp]	8.7	0.8255
AT4G28230			unknown protein		Lus10031619 [exp]	9.9	0.8817
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10035281 [exp]	13.3	0.8195

Compare expression of checked genes

Lus10041688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.