Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55250 962 / 0 HUB2, HISTONEMONO-UBIQUITINATION2 histone mono-ubiquitination 2 (.1.2.3.4) AT2G44950 410 / 1e-129 RDO4, HUB1 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) AT4G03510 49 / 7e-06 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT5G05130 49 / 1e-05 DNA/RNA helicase protein (.1) AT3G16600 45 / 0.0002 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G74990 42 / 0.0003 RING/U-box superfamily protein (.1) AT3G58030 43 / 0.0008 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024057 [exp] 1600 / 0 AT1G55250 911 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Lus10042890 [exp] 468 / 2e-151 AT2G44950 885 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Lus10028187 [exp] 336 / 4e-102 AT2G44950 731 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Lus10039001 [exp] 45 / 0.0002 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10011184 [exp] 44 / 0.0003 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10018489 [exp] 44 / 0.0003 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2) Lus10011027 [exp] 45 / 0.0004 AT5G01960 619 / 0.0 RING/U-box superfamily protein (.1) Lus10029292 [exp] 44 / 0.0004 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10022569 [exp] 43 / 0.0005 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G008800 [exp] 1208 / 0 AT1G55250 993 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Potri.002G141300 [exp] 505 / 6e-166 AT2G44950 877 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.014G055800 [exp] 484 / 1e-157 AT2G44950 917 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.003G216651 [exp] 365 / 6e-118 AT1G55250 281 / 9e-92 histone mono-ubiquitination 2 (.1.2.3.4) Potri.006G035700 [exp] 51 / 4e-06 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033600 [exp] 47 / 4e-05 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1) Potri.003G148300 [exp] 45 / 0.0001 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.016G034000 [exp] 46 / 0.0002 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.002G259000 [exp] 45 / 0.0002 AT1G04020 472 / 3e-156 breast cancer associated RING 1 (.1.2) Potri.007G000700 [exp] 45 / 0.0003 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041689 pacid=23146872 polypeptide=Lus10041689 locus=Lus10041689.g ID=Lus10041689.BGIv1.0 annot-version=v1.0 ATGGCGAACTCAGAATCGGACGAGCCAGACAAGAAGAGGCCTCACTTGAATCCTCCTCTTTCGCCAGCCATGTCTCCTAATTACAGTACTTTTCCAGCCA ACAATCAAACCGTTGATGTTGCAGTTCTCCATCACCAGAATCAAAAGCTTGTTCAGCAATTAGATGTTCAAAAGCGTGAATTGCGTGATCTTGAAGCTAA AATTGAGGAACTCAAAGTTAATCAGGCTTCATATGATGACATTCTCATCACGGCAAACCAAGCGTGGAATGAGTTAGTGGATGACTTGATCCTACTCACT ATACGAGCTGGTGGAAGGCCGAATGTGTTACAAACTTTAGATGATGCAGACAAAGCTCGAGGCATGATTCCATCTTGTCCTGCCGATGAAATGTTCCTTT GTAGATTTTTGGGAAAAGATTCACTTAAAGACAGTGGCAATGATGGAGTCGCTGCTTATACTCGTGAAATCCTTGCTTCACGCCACTCCTTCACTATTGG GCTGATGGAGTCTTTGGAGACCACTATTGATACTCAGAGGATGGAGAACGAGACAATAAAACAAGCTTTGAATGGAAATCTATCCACAGAAGATGCCATC ATTCAGCTGTCAAGGCTTGATGATATGATGAGAGAAGAAGCAAGGAATCTGCATGAGGTGATTGATAATCTCCACATGAAGCATAAAGAATACTTGGATG GAATCCAGAATTACATAAGCACCCATTCAACAGAACAATCTGAGATTTCACGTGTTGCAGGGGAGCTGGAGGAATGTTTGGCTGAATTAGAAGATAGCCG GAGAAAGTTGATTGATCTGGAGATGCAAAAAGATAAGGCAGCTGCACTACATGGTCCAGTTCCAAGTGCTGCAAATGGAACCTTGTCCCCAGAGAAGCTA ACGGATAGATCTAAGGGGTTGCGAGAATTGAAAGATGCCATTGAGGAAATGAAGGTGATAGCTGCTGACCGTCTTTCCGAGCTTCAAGATGCAGAGGATG AAAACAAGATTTTATCAGAACATTTGGAAGTTCTTCAGAATGAGCTGAAGGATAATAAACATATCAGCTCGTCCCGTCTCTATAACTTAGTGAACGATCA GCTTCAACACTGGAATGCTGAGGTGGAGCGTTATAAAGTTCAGCTGGAAGTTTTGCAGGCTGATAGGTCTTCAATTGTCAGAAGGGGGAAAGAAGCAAAA ATAAAGTTGGAGTCAACTGACTTAGCTAGAAAGTCCATCGACAGTCCCGATTCTAGAATTCAAGAGCTGGAAGTCCAGCTGCAGACGTGTAAAATTGAAA AAAATGACCTTGAGATCAAAATGGAAGAAGCCGTCCAGGATTCTGGGAGAAAGGACATTAAAGCAGAATTCCGTGTAATGGCCTCAGCGCTGTCCAAGGA GATGGGTATAATGGAAGCCCAATTGAATCGATGGAAGCAAACAGCAGATGAAGCAATTTCTTTGCGAGAGAAATCCCAATCACTGAAATCTTTGTTAACT GAAAAGACAAATGAACAAAATTTCCTAGCAGGAAAGTGTGCTGAGCAAGTGATAGAAATCACAAGATTGAAGACTCAGATTGAAAGTTTGCAGAGGGAGA AATTGGAGTTACAGACGATCGTGGACATGTTTCGGCAGGAAGACTCTGGTAATAGAGATATCAATGAAATTAAAGAATCTAAGCGGAGGGCTCTTTCCCA AGTTGAAACTCTACTAAGTGCTTTGGATGAACATCCTCTTCAGTTGAGAGTTAAAGCAGCTAAGGAGGCTGAGATGGCTTGCCAACAAAGACTTACTGCT GCTGAAGCCGAAATTGTTGAATTGAGGGCCAAATTAGATGCTTCTGAAAGAGATGTGATGGAGCTCAAGGAAGCAATTGCGAGCAAAGACAGGGATGCTG AGGCTTTTATTTCTGAAATCGAGACTATTGGTCAAGCTTATGAAGATATGCAGACGCAGAACCAGCATCTACTACAGCAAGTTACTGAAAGGGACGACTA TAATATCAAGCTTGTGTCTGACAGTGTGAAGACGAAGCAAGCCCAAAGCGTTCTGCTGGCTGAGAAACAGGCCCTAACAAAACAACTCCAGCAATTAAAT ACGTCAATAGAGCAAGTGAAATCGAGGATTTTCCACAGTGAGGAACAAATGAAAGCATGTTTTGCGGAGGCAATCCGGAATAATGAAGAAAACAGACATC TGACAATCACACTTGAGACTGCACGTTGGGAATCAATGGATGCTGAGAAGGAACAGAAGTGTATCAAGTATGCTCTTTCTTCTTCGGAAAAGGAATACGA GCAGATCCAAAAGAAGTCGGATGAAGTCAGGACAGAACTGGAGACTGAAAAATATGAGAGGCAGAAGGTGGAGGAAGAGCTATTGGAGGTGAAGAATCAG ATACTGGAGCTGACTTCGGAGACAGGTGAAGCAGCGATATTGAAAATCCAGGATGAAATCAAAGACTGTAAAAGGATCCTAAAGTGCAGCGTGTGCTCGG ACCGTCCAAAGGAAGTGGTGATCGTAAAATGCTACCACCTCTTCTGCAATCCGTGCATCCAGAGGAATCTAGAGTTGCGGCACAGGAAATGCCCAGGATG CGGAACAGCTTTCGGACAGAGTGATGTCCGGTTTGTGAAGATATAG
AA sequence Show only first row Show all	>Lus10041689 pacid=23146872 polypeptide=Lus10041689 locus=Lus10041689.g ID=Lus10041689.BGIv1.0 annot-version=v1.0 MANSESDEPDKKRPHLNPPLSPAMSPNYSTFPANNQTVDVAVLHHQNQKLVQQLDVQKRELRDLEAKIEELKVNQASYDDILITANQAWNELVDDLILLT IRAGGRPNVLQTLDDADKARGMIPSCPADEMFLCRFLGKDSLKDSGNDGVAAYTREILASRHSFTIGLMESLETTIDTQRMENETIKQALNGNLSTEDAI IQLSRLDDMMREEARNLHEVIDNLHMKHKEYLDGIQNYISTHSTEQSEISRVAGELEECLAELEDSRRKLIDLEMQKDKAAALHGPVPSAANGTLSPEKL TDRSKGLRELKDAIEEMKVIAADRLSELQDAEDENKILSEHLEVLQNELKDNKHISSSRLYNLVNDQLQHWNAEVERYKVQLEVLQADRSSIVRRGKEAK IKLESTDLARKSIDSPDSRIQELEVQLQTCKIEKNDLEIKMEEAVQDSGRKDIKAEFRVMASALSKEMGIMEAQLNRWKQTADEAISLREKSQSLKSLLT EKTNEQNFLAGKCAEQVIEITRLKTQIESLQREKLELQTIVDMFRQEDSGNRDINEIKESKRRALSQVETLLSALDEHPLQLRVKAAKEAEMACQQRLTA AEAEIVELRAKLDASERDVMELKEAIASKDRDAEAFISEIETIGQAYEDMQTQNQHLLQQVTERDDYNIKLVSDSVKTKQAQSVLLAEKQALTKQLQQLN TSIEQVKSRIFHSEEQMKACFAEAIRNNEENRHLTITLETARWESMDAEKEQKCIKYALSSSEKEYEQIQKKSDEVRTELETEKYERQKVEEELLEVKNQ ILELTSETGEAAILKIQDEIKDCKRILKCSVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPGCGTAFGQSDVRFVKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	0	1
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10004503 [exp]	1.0	0.9131
AT5G17370			Transducin/WD40 repeat-like su...		Lus10001227 [exp]	2.4	0.8702
AT3G04480			endoribonucleases (.1)		Lus10027962 [exp]	4.7	0.8586
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	5.8	0.8953
AT5G59830			unknown protein		Lus10024426 [exp]	6.1	0.8259
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10023746 [exp]	6.3	0.8726
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10018019 [exp]	7.9	0.8689
AT2G35035		URED	urease accessory protein D (.1...		Lus10030170 [exp]	8.1	0.8828
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	8.5	0.8550
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10008967 [exp]	10.0	0.8370

Compare expression of checked genes

Lus10041689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.