Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39850 1315 / 0 AtABCD1, ACN2, CTS, PED3, PXA1 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) AT1G54350 176 / 7e-46 ABCD2 ATP-binding cassette D2, ABC transporter family protein (.1) AT2G07680 73 / 7e-13 ATMRP11, ABCC13 ATP-binding cassette C13, multidrug resistance-associated protein 11 (.1) AT3G28345 72 / 2e-12 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT1G70610 72 / 2e-12 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT3G28380 70 / 7e-12 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28415 70 / 8e-12 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28390 69 / 1e-11 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT5G39040 68 / 2e-11 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT4G25960 68 / 3e-11 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024056 [exp] 1642 / 0 AT4G39850 1666 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10041691 [exp] 231 / 8e-66 AT4G39850 613 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10001758 [exp] 173 / 1e-44 AT1G54350 882 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Lus10001839 [exp] 131 / 2e-31 AT1G54350 670 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Lus10024162 [exp] 81 / 5e-15 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 78 / 3e-14 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 77 / 5e-14 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10023929 [exp] 77 / 8e-14 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10014427 [exp] 76 / 9e-14 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076200 [exp] 1421 / 0 AT4G39850 2062 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Potri.007G092200 [exp] 1382 / 0 AT4G39850 2061 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Potri.010G176400 [exp] 158 / 1e-39 AT1G54350 910 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Potri.011G133800 [exp] 82 / 2e-15 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 79 / 1e-14 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 77 / 6e-14 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 76 / 7e-14 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.003G182601 [exp] 76 / 1e-13 AT2G07680 1759 / 0.0 ATP-binding cassette C13, multidrug resistance-associated protein 11 (.1) Potri.017G085000 [exp] 75 / 3e-13 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 73 / 7e-13 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter CL0241 [flax] [poplar] ABC_membrane PF06472 [flax] [poplar] ABC_membrane_2 ABC transporter transmembrane region 2
Representative CDS sequence Show only first row Show all	>Lus10041690 pacid=23146776 polypeptide=Lus10041690 locus=Lus10041690.g ID=Lus10041690.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTCCAACTATTGAAATTTACGGAGCATGGTCGAAGCCTGCTGGCTTCGAGAAGAAAATCTTTATTGTTTGCTGCTGGTATCTTGGTTGCGG GTGGAACTACTGCATATTTGCAGTCTCGTTTGAGGATTAAAAAGTCTGATTCATTTGGTAACTATAATGGGGTGGAAGATGATAAAGACAATTCAGATAA GACAATTACAAAAGGCAACAATGCAAAGAAAACTGCAAAGAAAGGGGGCCTGAAATCACTGAAAGTTCTAGCTGCCGTCCTCCTGTCTGATATGGGGAAA GTGGGTGCAGCAGACCTCTTGGCCATGATAGCCATTGCGGTATTAAGAACTAGTTTGAGCAACCGACTGGCAAAAGTACAAGGTTTTCTGTTTCGGGCAG CTTTTCTCCGCCGTGTGCCATTGTTTCTCCGGCTGATATCAGAAAATATCTTACTGTGCTTCCTGCTATCAACAATGCATTCTACTTCAAAATATGTTAC TGGGACGTTAAGCCTGTGTTTTAGAAAGATACTGACCAAACTTATCCATACACATTATTTTGAGAATATGGCCTACTACAAAATATCCCATGTTGATGGT CGGATCACCAATCCTGAACAAAGAATAGCAAGTGATGTCCCAAAGTTCTGTTCGGAGCTCAGTGAACTTGTGCAGGATGATCTTACAGCTGTTACTGATG TTGTTCTCTACACCTTCCGGCTTGTTTCTTATGCTAGCCCAAAATATTTGGTTTACATATTGGCCTATGTATTGGGAGCAGGTGCTCTCATTAAAAATTT CTCTCCTTCTTTTGGGAAGCTGATGTCTAAAGAACAGCAACTAGAAGGTGAATATCGGCAGCTGCAGTCACGCCTGCGTACCCATGCTGAAAGTATAGCT TTCTATGGTGGTGAGCAAAGAGAAGAATCTCATATACAGGAAAAGTTCAGAACTCTCATTAGACACATGAAAGTTGTTCATCATGAGCATTGGTGGTTTG GCATGATCCAAGATTTCCTGGCAAAGTATCTTGGTGCTACCGTTGCTGTTATTTTGATCATTGAGCCTTTCTTTGCTGGCCGTCTTAAACCAGACACTTC AACATTGGGAAGGGCAACAATGCTCAGCAACTTAAGATACCATACAAGTGTTATAATATCTTTGTTTCAGTCACTTGGCACCCTTTCCATAAGTTCTAGA AGGCTAAGTCGTCTGAGTGGTTATGCTGAACGCATTCATGAATTAATAGCCATATCAAGGGAGCTAGGCAGTGGTGACAAGTCTTTGCAAAGAGATGGGA GCAGGAACTACTTCAGTGAAGCTGATTACGTTGAGTTTTCTGGTGTCAAGGTTGTTACACCCACTGGTAATGTTCTGGTGAAAGATTTGAGTCTTAAAGT TGAACCTGGATCCAACCTGTTAATCACAGGTCCAAATGGCAGTGGAAAGAGCTCACTTTTCCGAGTTCTAGGAGGACTTTGGCCTTTGGTGTCTGGCCAT ATAGTGAAACCTGGTGTTGGTTCCGAGCTTAATAAGGAGATATTCTATGTTCCTCAAAGGCCATACACTGCTGTAGGCACGCTTCGAGATCAGTTAATTT ATCCTCTGACCTCTGATCACGAGGTTGAAGCACTTACACGCGGTGGCATGATTGAGTTGTTGAAAAATGTTGACCTTGAGTATCTATTGGATCGTTACCC CCCAGAAAAAGAAGTAAATTGGGGAGAGGAATTATCTCTGGGAGAGCAGCAAAGGTTAGGGATGGCGAGATTGTTCTATCATAAGCCTAAATTTGCTATT CTTGATGAATGTACTAGTGCTGTTACTACTGATATGGAGGAGCGTTTTTGTGCGAAAGTTCGAGCTATGGGAACATCATGTATAACCATATCACATCGAC CGGCTTTAGTTGCGTTTCATGATGTGGTTTTGTCTTTGGATGGAGAAGGAGGATGGGAAGTTGATAAGAAAAGGAAGGATTCCCCAGCCCTGACTCAAAT GGGAACATATGCCACAAAGAGCTCTGAGACAGAACGTAAAAGTGATGCTATGGTAGTCCAACGGGCATTTGCTACGACAGATGAGGATTCTGAATTTCCA AGTTCGAAGGCACAATCTTATATTTCTGAAGTGATAGCAAGATCGCCACAGATCGATCATAATATTCCCTTGAATGCTGTTGCACAACTACAGAGTACCC CACGGGCCTTGCCATTGCGAGTGGCTGCAATGTTTAAGATACTAGTCCCAACAGTGCTTGACAAGCAAGGGGCAGAATTGCTTGCAGTTGCTTTCTTGGT TATGTCTAGAACGTTTGTCTCGGACAGGATTGCCTCACTCAACGGAACAACCGTGAAGTATGTACTGGAGCAAGACAAAGCAGCATTCATTCGATTAGTA GGTATCAGCGTTATCCAGAGTGCTGCATCATCTTTTATTGCACCCTCATTGAGGCATTTGACATCAAGGCTGGCTCTTGAGTGGAGGATTCGCTTGACTC GACATTTGCTAAAGAACTACATGAGAAACAACGCATTTTACAAGGTTTTCCACTTGTCAAACAAAAATATTGATGCTGATCAAAGGATAACTCATGATCT TGAGAAGTTAACTGCTGATTTATCTGGCCTGGTGACTGGGATGGTAAAGCCATCTGTTGATATCTTATGGATGCAGATCCAGCTAGTAGTGATCCCTACA AATCAGGGATTAATCCTACCTACCACTTACTATGATTACACTGCCTAA
AA sequence Show only first row Show all	>Lus10041690 pacid=23146776 polypeptide=Lus10041690 locus=Lus10041690.g ID=Lus10041690.BGIv1.0 annot-version=v1.0 MASLQLLKFTEHGRSLLASRRKSLLFAAGILVAGGTTAYLQSRLRIKKSDSFGNYNGVEDDKDNSDKTITKGNNAKKTAKKGGLKSLKVLAAVLLSDMGK VGAADLLAMIAIAVLRTSLSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTMHSTSKYVTGTLSLCFRKILTKLIHTHYFENMAYYKISHVDG RITNPEQRIASDVPKFCSELSELVQDDLTAVTDVVLYTFRLVSYASPKYLVYILAYVLGAGALIKNFSPSFGKLMSKEQQLEGEYRQLQSRLRTHAESIA FYGGEQREESHIQEKFRTLIRHMKVVHHEHWWFGMIQDFLAKYLGATVAVILIIEPFFAGRLKPDTSTLGRATMLSNLRYHTSVIISLFQSLGTLSISSR RLSRLSGYAERIHELIAISRELGSGDKSLQRDGSRNYFSEADYVEFSGVKVVTPTGNVLVKDLSLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH IVKPGVGSELNKEIFYVPQRPYTAVGTLRDQLIYPLTSDHEVEALTRGGMIELLKNVDLEYLLDRYPPEKEVNWGEELSLGEQQRLGMARLFYHKPKFAI LDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWEVDKKRKDSPALTQMGTYATKSSETERKSDAMVVQRAFATTDEDSEFP SSKAQSYISEVIARSPQIDHNIPLNAVAQLQSTPRALPLRVAAMFKILVPTVLDKQGAELLAVAFLVMSRTFVSDRIASLNGTTVKYVLEQDKAAFIRLV GISVIQSAASSFIAPSLRHLTSRLALEWRIRLTRHLLKNYMRNNAFYKVFHLSNKNIDADQRITHDLEKLTADLSGLVTGMVKPSVDILWMQIQLVVIPT NQGLILPTTYYDYTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041690 [exp]	0	1
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10011393 [exp]	1.4	0.9383
AT5G15680			ARM repeat superfamily protein...		Lus10031961 [exp]	6.2	0.9399
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10038405 [exp]	7.9	0.9347
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	8.7	0.9315
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10033864 [exp]	8.8	0.9163
AT4G39420			unknown protein		Lus10030711 [exp]	10.4	0.9213
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023393 [exp]	10.8	0.9320
AT4G15840			BTB/POZ domain-containing prot...		Lus10002873 [exp]	11.4	0.8816
AT4G39420			unknown protein		Lus10005786 [exp]	14.0	0.9276
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	14.1	0.9285

Compare expression of checked genes

Lus10041690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.