Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39850 597 / 0 AtABCD1, ACN2, CTS, PED3, PXA1 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) AT1G54350 103 / 6e-23 ABCD2 ATP-binding cassette D2, ABC transporter family protein (.1) AT1G20140 81 / 2e-17 ASK4 SKP1-like 4 (.1) AT5G42190 80 / 2e-17 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) AT1G75950 78 / 1e-16 UIP1, SKP1A, ATSKP1, ASK1, SKP1 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) AT2G25700 75 / 1e-15 ASK3 SKP1-like 3 (.1) AT3G60010 73 / 4e-15 ASK13 SKP1-like 13 (.1) AT4G34470 71 / 2e-14 ASK12 SKP1-like 12 (.1) AT4G34210 71 / 2e-14 ASK11 SKP1-like 11 (.1) AT2G20160 68 / 3e-13 MEO, ASK17 MEIDOS, ARABIDOPSIS SKP1-LIKE 17, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024056 [exp] 345 / 4e-105 AT4G39850 1666 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10041690 [exp] 244 / 2e-70 AT4G39850 1404 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10041874 [exp] 100 / 3e-24 AT4G34210 201 / 3e-67 SKP1-like 11 (.1) Lus10001758 [exp] 102 / 1e-22 AT1G54350 882 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Lus10013575 [exp] 88 / 3e-20 AT1G75950 255 / 2e-88 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10005610 [exp] 88 / 3e-20 AT5G42190 261 / 2e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10017282 [exp] 88 / 3e-20 AT5G42190 259 / 6e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10017281 [exp] 88 / 4e-20 AT5G42190 259 / 4e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10019794 [exp] 82 / 4e-18 AT1G75950 241 / 8e-83 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076200 [exp] 643 / 0 AT4G39850 2062 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Potri.007G092200 [exp] 634 / 0 AT4G39850 2061 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Potri.010G176400 [exp] 105 / 2e-23 AT1G54350 910 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Potri.002G018700 [exp] 94 / 3e-22 AT5G42190 249 / 6e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G109900 [exp] 91 / 2e-21 AT5G42190 249 / 5e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G243100 [exp] 91 / 3e-21 AT1G75950 244 / 2e-84 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.004G175900 [exp] 85 / 4e-19 AT5G42190 245 / 2e-84 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.009G135800 [exp] 84 / 6e-19 AT1G20140 215 / 9e-73 SKP1-like 4 (.1) Potri.001G132300 [exp] 71 / 2e-14 AT1G75950 122 / 3e-36 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.012G085200 [exp] 53 / 3e-08 AT4G34210 157 / 7e-50 SKP1-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF03931 [flax] [poplar] Skp1_POZ Skp1 family, tetramerisation domain CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter CL0241 [flax] [poplar] ABC_membrane PF06472 [flax] [poplar] ABC_membrane_2 ABC transporter transmembrane region 2
Representative CDS sequence Show only first row Show all	>Lus10041691 pacid=23146665 polypeptide=Lus10041691 locus=Lus10041691.g ID=Lus10041691.BGIv1.0 annot-version=v1.0 ATGATTCATCCTTCTGAGTATAATGCTGTCATTGTTCTTTTTGTTAGGTTTACTTGGAGAATGAAGCTTCTAACAGGTCGGAGGGGTGTTGCTATATTGT ATGCTTACATGTTTCTCGGTCTTGGTTTTCTACGAGCTGTTACTCCTGATTTTGGTGATCTAGCCAGCCGGGCGCAGGAGCTCGAGGGAACCTTCAGGTT CATGCATGAAAGATTGAGAACGCATGCTGAGTCTGTTGCCTTCTTTGGAGGCGGTGCTCGAGAAAAAACTATGATTGAGTCGAGGTTCAAAGACCTCCTG CGACACTCGACATTGCTTTTGAGAAAGAAATGGTTGTATGGTATACTCGATGATTTTGTCACCAAGCAGCTTCCACACAATGTGACTTGGGGGTTGAGCC TGTTATATGCCATAGAACACAAAGGAGACCGTGCAATGATCTCAACTCAGGGGGAGCTGGCGCATGCACTTAGATATTTGGCGTCTGTCGTCTCTCAGAG CTTTTTGGCCTTTGGTGACATTCTTGAACTGCACAAGAAGTTTGTTGAGCTCTCTGGCGGAATAAACAGAATTTTTGAGCTTGACGAGCTTCTACGTGCT GCACAATCTGGTGGTGCTTCAGCAGATAAACTCTCTATGTCTACTGAGAGGTACCTTCACTCAGAAGATGCAATCTCCTTTATAGAGGCTGACATAATCA CCCCATCACAGAAATTATTAGCACGGCAGTTGACATGTGAAATTGTACAAGGGAAGAGTCTGCTTGTCACTGGTCCAAATGGCAGTGGAAAGAGTTCAAT TTTCAGAGTGCTTAGAGGTCTTTGGCCGATTGCGAATGGAAGACTAGCTAAACCATCTCAACATTTTAGTGAAGAAAGAGGATACGGCTGGGGGGGTTTT TTTTTTTTCCCAACCCCCTTTACTTTTTTTTGGGGTCTTCGAGGACAAACAAAATATACCCCTGACCAAATCATATATCCCCTATCTCGTGATGAAGCAG AACTTAGGACCTTAAGGTTGTTTGGGAAAGATGCAGCTTATGAACATGCCGACTCAATCAAGTTCCTGGATTCGCGTTTGAGAGTTATTCTGGAGAATGT TAGACTAAATTATCTTTTGGAGAGAGAACAAGGTGGTTGGGATTCTAATCAGAACTGGGAAGATATGCTCTCTCTGGGTGAACAACAAAGATTGGGCATG GCTCGCCTCTTCTTCCACAGTCCTGAATTTGGCATCCTCGACGAGTGCACAAACGCAACAAGTGTGGATGTCGAGGAACAACTTTATAAGCTTGCTACAG AAATGGGCATCACTGTGGTTACTTCCTCTCAGAGAGAGAACTTTGAGAGTGCGCGCGCGAGAGCGAGAGCCAGGGAGACTGTCAGAGCAGGGTCGGAGAC TTGGAGTTGCGTGAGTGTTGTACGATCGTCAACGGAGCTAGCTATGTTGGCGGAGAGGACATTCACGCTGATCAGCAGTGACGCCGAGTACTTCCAAGTC GAGGAAGCAGTCGCTATGAAGCCGCCGACGATCAAGCGCATGATGGTGTACGATCGTGCCGGTGAAGGCATCCCGTTGCCAACCGTTGACAGCAATATCC TTCCAATGGTGATCGAGTACTGCAAGAAGCACGTCGAAGTCCCTGAACCTGATGAGACTATCCAGCAGTGGGACGCCAATTTCGTCAAAACTGATATATT TTTTACCCAAACTGATTCCACTAATAGTTAA
AA sequence Show only first row Show all	>Lus10041691 pacid=23146665 polypeptide=Lus10041691 locus=Lus10041691.g ID=Lus10041691.BGIv1.0 annot-version=v1.0 MIHPSEYNAVIVLFVRFTWRMKLLTGRRGVAILYAYMFLGLGFLRAVTPDFGDLASRAQELEGTFRFMHERLRTHAESVAFFGGGAREKTMIESRFKDLL RHSTLLLRKKWLYGILDDFVTKQLPHNVTWGLSLLYAIEHKGDRAMISTQGELAHALRYLASVVSQSFLAFGDILELHKKFVELSGGINRIFELDELLRA AQSGGASADKLSMSTERYLHSEDAISFIEADIITPSQKLLARQLTCEIVQGKSLLVTGPNGSGKSSIFRVLRGLWPIANGRLAKPSQHFSEERGYGWGGF FFFPTPFTFFWGLRGQTKYTPDQIIYPLSRDEAELRTLRLFGKDAAYEHADSIKFLDSRLRVILENVRLNYLLEREQGGWDSNQNWEDMLSLGEQQRLGM ARLFFHSPEFGILDECTNATSVDVEEQLYKLATEMGITVVTSSQRENFESARARARARETVRAGSETWSCVSVVRSSTELAMLAERTFTLISSDAEYFQV EEAVAMKPPTIKRMMVYDRAGEGIPLPTVDSNILPMVIEYCKKHVEVPEPDETIQQWDANFVKTDIFFTQTDSTNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041691 [exp]	0	1
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10030737 [exp]	4.1	0.6186
AT5G18310			unknown protein		Lus10021984 [exp]	5.1	0.6790
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10033859 [exp]	7.3	0.6732
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10018939 [exp]	13.1	0.6878
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010665 [exp]	16.3	0.6235
					Lus10033740 [exp]	18.3	0.6482
AT5G65630		GTE7	global transcription factor gr...		Lus10010525 [exp]	33.2	0.6289
AT4G30660			Low temperature and salt respo...		Lus10035809 [exp]	34.3	0.6602
AT1G56300			Chaperone DnaJ-domain superfam...		Lus10020685 [exp]	37.4	0.5964
AT2G30920		ATCOQ3, EMB3002	embryo defective 3002, coenzym...		Lus10033512 [exp]	42.2	0.6371

Compare expression of checked genes

Lus10041691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.