Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10210 88 / 2e-21 unknown protein AT5G65030 86 / 1e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041694 [exp] 395 / 1e-141 AT5G65030 122 / 2e-34 unknown protein Lus10041693 [exp] 395 / 1e-141 AT5G65030 122 / 2e-34 unknown protein Lus10024055 [exp] 353 / 4e-125 AT5G65030 124 / 2e-35 unknown protein Lus10014339 [exp] 222 / 2e-73 AT5G65030 135 / 7e-40 unknown protein Lus10026049 [exp] 222 / 2e-73 AT5G65030 129 / 3e-37 unknown protein Lus10026048 [exp] 204 / 1e-66 AT5G65030 129 / 3e-37 unknown protein Lus10014340 [exp] 113 / 1e-31 AT5G65030 62 / 2e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G092300 [exp] 172 / 2e-54 AT5G65030 155 / 8e-48 unknown protein Potri.005G076100 [exp] 157 / 4e-48 AT5G65030 154 / 1e-47 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041692 pacid=23146751 polypeptide=Lus10041692 locus=Lus10041692.g ID=Lus10041692.BGIv1.0 annot-version=v1.0 ATGGCTCCACCAGCATCCTCTCACGATCAACAACTAATTTCATGCGAGATCATGATCCACCAAGCCAAGAATGTGCAAGAGTTCATGACCATGAACAACC ACTACTACAAACCCAATGGCAAGTTGTTTGTCAGATACTATCTCTCCGCGGGAAACAACAAACGGATCCAACTCAACACCAAAGAGATCTCGACGACGTC TACTAGTACTAGCTACAACCATCTAATTTCTTGGAACGAGTCATCCTCCTTGGATTGCCTAGGCACTCAAGACTCCATTGACAACCTCAAGAAAAGTCTA GTTGTTTTCGAGCTGAGATGGAGACCCTTCTCATCGTCAAGGCAAAGTAATTATAACATGTTTGGCCTTGCATCCGGTTCGAAGCTCGTGGGTAGAGCTG AGCTTCCATGGGAAAGCGTCATGGAGTCGCCTGAAATGGAAGTTGAGAAGTGGGTTGTAATGAACCCGATTAAGAAGGGTAGTCATGTTAGTTGTGATGG TGTTAAGCCCCCTTCGGTAAAGATTGGGATGAGGGTTAGACTTCCAAGTTCAATGGACATGACGTCAAAGAATAACAAGAGAAGTGATGAGTGCGGGTGT TGTAGACATAGTGGACGCAATTTCTGTGAACATTATGATGTGATTGCCTTAGCGGCTGCTTTTGATTCACTTTAA
AA sequence Show only first row Show all	>Lus10041692 pacid=23146751 polypeptide=Lus10041692 locus=Lus10041692.g ID=Lus10041692.BGIv1.0 annot-version=v1.0 MAPPASSHDQQLISCEIMIHQAKNVQEFMTMNNHYYKPNGKLFVRYYLSAGNNKRIQLNTKEISTTSTSTSYNHLISWNESSSLDCLGTQDSIDNLKKSL VVFELRWRPFSSSRQSNYNMFGLASGSKLVGRAELPWESVMESPEMEVEKWVVMNPIKKGSHVSCDGVKPPSVKIGMRVRLPSSMDMTSKNNKRSDECGC CRHSGRNFCEHYDVIALAAAFDSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65030			unknown protein		Lus10041692 [exp]	0	1
AT5G65030			unknown protein		Lus10041693 [exp]	1.4	0.9599
AT5G65030			unknown protein		Lus10041694 [exp]	2.0	0.9570
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	21.4	0.8711
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031859 [exp]	26.2	0.8642
AT5G62620			Galactosyltransferase family p...		Lus10042164 [exp]	30.3	0.8661
AT4G16563			Eukaryotic aspartyl protease f...		Lus10000725 [exp]	30.5	0.8681
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001631 [exp]	30.6	0.8230
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10000624 [exp]	35.9	0.8191
AT2G28780			unknown protein		Lus10040846 [exp]	41.8	0.7899
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	41.9	0.8614

Compare expression of checked genes

Lus10041692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.