Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39860 395 / 3e-139 unknown protein AT1G78150 288 / 3e-97 unknown protein AT1G35780 285 / 4e-96 unknown protein AT2G22270 254 / 2e-83 unknown protein AT2G22260 54 / 6e-08 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024053 [exp] 573 / 0 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2) Lus10020921 [exp] 337 / 4e-116 AT1G35780 367 / 1e-128 unknown protein Lus10033456 [exp] 323 / 1e-110 AT1G35780 362 / 1e-126 unknown protein Lus10009931 [exp] 77 / 4e-18 AT1G35780 107 / 2e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076000 [exp] 408 / 3e-144 AT4G39860 354 / 3e-123 unknown protein Potri.007G092400 [exp] 400 / 2e-141 AT4G39860 384 / 4e-135 unknown protein Potri.002G095300 [exp] 356 / 6e-124 AT1G35780 364 / 2e-127 unknown protein Potri.005G165500 [exp] 349 / 4e-121 AT1G35780 357 / 2e-124 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041695 pacid=23146602 polypeptide=Lus10041695 locus=Lus10041695.g ID=Lus10041695.BGIv1.0 annot-version=v1.0 ATGGAGAGGAACACTCCCGTAAGAAAGCCACATACTTCCACCGCCGATCTGCTCACCTGGTCCGAGAAGCCTGCTCCCGATTCTCCGGCCACCGCTGCAT CCGCTACCCGCTCCCACCAGCCATCGGATAGGATCGGTAAGGTCCTCTCCGGAGGTCAGGTTACCGATGAGGAAGCTCAAAGCCTCGCTAGCAAGAAGCC GTGTTCAGGCTATAAGTTGAAGGAGATGACAGGCAGTGACATTTTTGGAGCTGATGGCACTGCAAGTGATGCGTCTGAAACGACTCATGCTAATTCCAGT GCTAGAACCTCGGTTCGTATAGTTCAGCAAGCTACGAATGGGATCAGCCAAATATCATTTAGCACCGAGGAGACTGTCTCTCCCAAGAAGCCTACCTCTA TCCCTGAGGTTGCTAAGCAAAGGGAGCTAAGTGGGACGTTGCAAAGTGACAGTGATTCGAAGAACAAGAAGCAGATATCGAATGCGAAATTCAAGGAGAT CAGCGGGCATGACATCTTTGCCCCTCCTCAGGAAACAACGCCTAGAGCGCATGTTGCTCGCTCCCTAGTCTCCAGAGAAAACAACAAGGAGCATGATGAA CCTGCGCCACGAAACATTCGCACTTCTGTCAAAGTATCTAATCCTGCCGGTGGACAGAGCAATATCCTATTTGGTGACGACCCTGTGGTGAAGACAGCAA AGAAGATACACAACCAGAAGTTTCAAGAGTTGACAGGAAACAACATCTTCAAGGGAGATGTTCCTCCTGGATCAGCTGAAAAGCCATTAAGCACAGCCAA ACTGAGAGAGATCAGTGGCAACGACATTAGCGGCAACGACATCTTTGCCGATGGCAAAGCAGAATCCAGGGACTACTTTGGAGGGGTCCGCAAGCCCCCC GGTGGAGAGAGCAGCATTTCGTTGATATAA
AA sequence Show only first row Show all	>Lus10041695 pacid=23146602 polypeptide=Lus10041695 locus=Lus10041695.g ID=Lus10041695.BGIv1.0 annot-version=v1.0 MERNTPVRKPHTSTADLLTWSEKPAPDSPATAASATRSHQPSDRIGKVLSGGQVTDEEAQSLASKKPCSGYKLKEMTGSDIFGADGTASDASETTHANSS ARTSVRIVQQATNGISQISFSTEETVSPKKPTSIPEVAKQRELSGTLQSDSDSKNKKQISNAKFKEISGHDIFAPPQETTPRAHVARSLVSRENNKEHDE PAPRNIRTSVKVSNPAGGQSNILFGDDPVVKTAKKIHNQKFQELTGNNIFKGDVPPGSAEKPLSTAKLREISGNDISGNDIFADGKAESRDYFGGVRKPP GGESSISLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39860			unknown protein		Lus10041695 [exp]	0	1
AT3G53320			unknown protein		Lus10023170 [exp]	2.4	0.8813
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10007989 [exp]	9.2	0.8479
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10018933 [exp]	9.8	0.8099
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10037574 [exp]	10.2	0.8505
AT1G22660			Polynucleotide adenylyltransfe...		Lus10025499 [exp]	11.4	0.8198
AT5G09995			unknown protein		Lus10016816 [exp]	14.0	0.8540
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10022136 [exp]	15.1	0.8656
AT1G06070	bZIP	AtbZIP69	Basic-leucine zipper (bZIP) tr...		Lus10008150 [exp]	15.8	0.8377
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	16.8	0.8101
AT4G19010			AMP-dependent synthetase and l...		Lus10016630 [exp]	18.4	0.8350

Compare expression of checked genes

Lus10041695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.