Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65020 395 / 2e-138 ANNAT2 annexin 2 (.1.2) AT5G10220 390 / 2e-136 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G10230 389 / 6e-136 ANN7, ANNAT7 annexin 7 (.1) AT1G35720 357 / 1e-123 ATOXY5, ANNAT1 annexin 1 (.1) AT5G12380 296 / 1e-99 ANNAT8 annexin 8 (.1) AT2G38760 242 / 2e-78 ANN3, ANNAT3 annexin 3 (.1) AT1G68090 207 / 8e-65 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT2G38750 157 / 1e-45 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024054 [exp] 621 / 0 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10008227 [exp] 351 / 3e-121 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10003611 [exp] 351 / 3e-121 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10041140 [exp] 329 / 2e-112 AT1G35720 414 / 2e-146 annexin 1 (.1) Lus10036470 [exp] 315 / 4e-107 AT1G35720 406 / 3e-143 annexin 1 (.1) Lus10019780 [exp] 291 / 8e-98 AT5G12380 372 / 1e-129 annexin 8 (.1) Lus10024174 [exp] 233 / 7e-75 AT2G38760 361 / 4e-125 annexin 3 (.1) Lus10024172 [exp] 230 / 1e-73 AT2G38760 349 / 1e-120 annexin 3 (.1) Lus10039550 [exp] 214 / 7e-67 AT2G38760 323 / 2e-109 annexin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G092500 [exp] 452 / 6e-161 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.005G075900 [exp] 445 / 2e-158 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.002G095600 [exp] 400 / 1e-140 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.003G200700 [exp] 321 / 2e-109 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.001G277500 [exp] 298 / 2e-100 AT5G12380 442 / 3e-157 annexin 8 (.1) Potri.001G024800 [exp] 254 / 5e-83 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.012G041900 [exp] 211 / 3e-66 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.015G031800 [exp] 203 / 2e-63 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.001G024900 [exp] 187 / 2e-57 AT2G38750 371 / 2e-129 annexin 4 (.1) Potri.008G139500 [exp] 173 / 9e-52 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [flax] [poplar] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Lus10041696 pacid=23146598 polypeptide=Lus10041696 locus=Lus10041696.g ID=Lus10041696.BGIv1.0 annot-version=v1.0 ATGTCGACCATCAAAGTTCCAGCAAATGTTCCACTTCCTTCCGAGGACGCCGAAGAACTCAACAAGGCTTTCCGTGGTCATTCCCCCTCCGTCATCCCAA TTAATATCTTTGGATGGGGCACCGATGAGGCAAAGATAATCTCCATATTAGCTCGCAGAAATGCAGCACAACGCGCCCTTATTCGAAAGGCTTACGTTGA AGCTTACGGAGAGGATCTCCTTGTATCCTTGGCCAAGGAGATTGGCGGCGACTTCTTGAATTGCGTGACATTATGGGCGCAAGAACCAGCGGAGCGAGAC GCGTATCTTGCACACGAAGCCACTAAGAAATTCAGTTCCAGCTATTTGATTGTCATGGAAATAGCCTGCAGCAGATCATCCGACGACCTTTTTAAGATCA GACAAGCGTATCATGCTCGTTACAAGAAGTCTCTCGAGGAAGATGTTATGGATCAGGCTCAGGGCGAATTTCGAAAGTTGCTGGCTCCTCTTTTGACTGC ATTTCGGTACGAGGAAGGGATCGAGGTAGACTTGAGCCTAGCCAAATCAGAGGCTAAGATACTTCATGACAAAATCTCAGCCAAAGCTTACTGGGATGAT GAGGTCATTAGGATTCTAAGTAGCAGAAGCAAGCCGCAGCTTAACGCCACGCTCAATCAGTACAACGACGCATTTGGAAGTACAATCACTAAGCATTTGA AGGCAGAGCCCAAGGATGAGTACCTCAAGTTACTGAGAGCAGCCATAAAGTGCCTGACCTACCCAGAGAAGTACTTCGAAAAGGTGTTGAGACTGTCGAT GAAAGGGTTCGGAACCGATGAAGATGCGCTAACAAGGGCGGTTACCACGAGGGCAGAAGTCGACATGCAACGTATTAAGGAAGAGTACTTCCGCAGAAAC AGTGTCACCCTTGGAAGTGCAGTTGCAGGGGATACCTCTGGAGACTACGCCAAGATGCTCCTTGCCTTGATTGGCCATGCTGATGCTTAG
AA sequence Show only first row Show all	>Lus10041696 pacid=23146598 polypeptide=Lus10041696 locus=Lus10041696.g ID=Lus10041696.BGIv1.0 annot-version=v1.0 MSTIKVPANVPLPSEDAEELNKAFRGHSPSVIPINIFGWGTDEAKIISILARRNAAQRALIRKAYVEAYGEDLLVSLAKEIGGDFLNCVTLWAQEPAERD AYLAHEATKKFSSSYLIVMEIACSRSSDDLFKIRQAYHARYKKSLEEDVMDQAQGEFRKLLAPLLTAFRYEEGIEVDLSLAKSEAKILHDKISAKAYWDD EVIRILSSRSKPQLNATLNQYNDAFGSTITKHLKAEPKDEYLKLLRAAIKCLTYPEKYFEKVLRLSMKGFGTDEDALTRAVTTRAEVDMQRIKEEYFRRN SVTLGSAVAGDTSGDYAKMLLALIGHADA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65020		ANNAT2	annexin 2 (.1.2)		Lus10041696 [exp]	0	1
AT5G65060	MADS	FCL3, MAF3, AGL...	MADS AFFECTING FLOWERING 3, AG...		Lus10037038 [exp]	5.5	0.6932
AT2G22180			hydroxyproline-rich glycoprote...		Lus10016800 [exp]	9.5	0.6982
AT1G50660			unknown protein		Lus10002069 [exp]	9.8	0.7143
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10010554 [exp]	19.0	0.6717
AT2G24400			SAUR-like auxin-responsive pro...		Lus10033348 [exp]	20.7	0.6993
AT4G30780			unknown protein		Lus10007704 [exp]	25.3	0.6355
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10010431 [exp]	26.1	0.7019
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	27.9	0.6921
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10035704 [exp]	33.0	0.6696
AT3G50120			Plant protein of unknown funct...		Lus10018320 [exp]	34.5	0.5854

Compare expression of checked genes

Lus10041696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.