Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39870 388 / 6e-134 TLD-domain containing nucleolar protein (.1.2) AT2G05590 216 / 5e-68 TLD-domain containing nucleolar protein (.1.2) AT5G06260 71 / 3e-13 TLD-domain containing nucleolar protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024053 [exp] 642 / 0 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2) Lus10014476 [exp] 208 / 2e-64 AT2G05590 307 / 4e-104 TLD-domain containing nucleolar protein (.1.2) Lus10023727 [exp] 195 / 9e-56 AT1G04500 315 / 3e-100 CCT motif family protein (.1) Lus10021306 [exp] 70 / 7e-13 AT5G06260 574 / 0.0 TLD-domain containing nucleolar protein (.1) Lus10016984 [exp] 59 / 3e-09 AT5G06260 460 / 5e-161 TLD-domain containing nucleolar protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075800 [exp] 475 / 1e-168 AT4G39870 405 / 1e-140 TLD-domain containing nucleolar protein (.1.2) Potri.007G092700 [exp] 459 / 3e-162 AT4G39870 414 / 3e-144 TLD-domain containing nucleolar protein (.1.2) Potri.010G065900 [exp] 217 / 6e-68 AT2G05590 286 / 6e-96 TLD-domain containing nucleolar protein (.1.2) Potri.006G206200 [exp] 73 / 5e-14 AT5G06260 604 / 0.0 TLD-domain containing nucleolar protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07534 [flax] [poplar] TLD TLD
Representative CDS sequence Show only first row Show all	>Lus10041697 pacid=23146786 polypeptide=Lus10041697 locus=Lus10041697.g ID=Lus10041697.BGIv1.0 annot-version=v1.0 ATGGGGAAGCAGAGATCGCTGAGGAGCAAAGCAGTTCATTTCGTGTCTGATCTCACCACTGTCCTCCTCAACCCTATCTCTGACAAACCTTCTTCCACTC CACATCCTTCCCCAGTTGATGAGGATGAATCAAAAAAGAGTTCGGTAGAGTCAATTACTGAAGAAGATCGAGAAGATTCTGTTAATGGCCCAGATACATC ATCTTTCAAGGCATTTCTCTACTCGTTACTGTCTGCTTCAGAGCCAGGAGACAAAGCAGACATAGATGCTGAAAATGAATATCATGCAGAAATGAGCGAT CAGCCATCTCATAGTGAAGTGAAGGAGAATGGGACAAAGAAAAGTTTGCTATCTAAGGGAAAACAATCTCTTAAAACCTTATACCAGCTCACCAGGATAA GCGGGGGTCGAGGTCAAGATCGCAAGGGTGATTCTAAGGCAAATGATGATCCTGATAAATTCGATGGACTTGAGATGAAGGATATGCCGAGTGGGAAAGA GCCTTCTGCTTTAGAAGTGCTTCCAGACATTTCTGAACCTTCTTTACTTCTCTCAGAAAAATCAAGGACTGTCCTTTACGCTTCGCTTCCAGTTCTTGTT AAAGAGAAGAAATGGTTACTGCTTTACAGCACATGGAGGCATGGGATTTCGCTCTCGACGTTATATAGGCGAAGCATGATTTGGCCTGGTCCTAGTCTGC TGGTTGTTGGAGACAGAAAAGGTGCAGTCTTTGGTGGCTTGGTTGAGGCACCACTAAGACCAACAACCAAAAAATACCAGGGCACGAATACGACTTTTGT CTTCACAAATACTTCTGGGAGTCCTGTTATATTCCGTCCTACAGGTGCGAATCGCTACTTCACATTGTGTTCAACGGATTTTCTAGCAGTTGGTGGTGGC GGCCATTTTGCCCTCTACTTGGACAATGACCTGTTGAATGGATCAAGTGCAGTGTCGGAGACGTATGGAAACCCTTGCCTTGCATTCTCAGAGGACTTCG AAATAAAAGAGGTGGAGTTATGGGGTTTTGTGTATGGTTCCAAGTACGATGAGCTACTTGCGTCCAGTAGAACAGAGGCTCCTGGGATTTGCCGCTGGTG A
AA sequence Show only first row Show all	>Lus10041697 pacid=23146786 polypeptide=Lus10041697 locus=Lus10041697.g ID=Lus10041697.BGIv1.0 annot-version=v1.0 MGKQRSLRSKAVHFVSDLTTVLLNPISDKPSSTPHPSPVDEDESKKSSVESITEEDREDSVNGPDTSSFKAFLYSLLSASEPGDKADIDAENEYHAEMSD QPSHSEVKENGTKKSLLSKGKQSLKTLYQLTRISGGRGQDRKGDSKANDDPDKFDGLEMKDMPSGKEPSALEVLPDISEPSLLLSEKSRTVLYASLPVLV KEKKWLLLYSTWRHGISLSTLYRRSMIWPGPSLLVVGDRKGAVFGGLVEAPLRPTTKKYQGTNTTFVFTNTSGSPVIFRPTGANRYFTLCSTDFLAVGGG GHFALYLDNDLLNGSSAVSETYGNPCLAFSEDFEIKEVELWGFVYGSKYDELLASSRTEAPGICRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39870			TLD-domain containing nucleola...		Lus10041697 [exp]	0	1
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	2.4	0.9518
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10027186 [exp]	2.4	0.9498
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	3.0	0.9491
AT2G32090			Lactoylglutathione lyase / gly...		Lus10010552 [exp]	6.9	0.9303
AT1G08110			lactoylglutathione lyase famil...		Lus10016138 [exp]	8.2	0.9397
AT4G35110			Arabidopsis phospholipase-like...		Lus10042396 [exp]	9.2	0.9379
AT3G52220			unknown protein		Lus10039101 [exp]	9.4	0.9318
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10018992 [exp]	11.0	0.9316
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	11.5	0.9370
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10026166 [exp]	12.4	0.9305

Compare expression of checked genes

Lus10041697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.