Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10240 950 / 0 ASN3 asparagine synthetase 3 (.1.2) AT5G65010 937 / 0 ASN2 asparagine synthetase 2 (.1.2) AT3G47340 848 / 0 AT-ASN1, DIN6, ASN1 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) AT5G39530 276 / 4e-87 Protein of unknown function (DUF1997) (.1) AT5G39520 246 / 5e-76 Protein of unknown function (DUF1997) (.1) AT5G19140 57 / 1e-08 AtAILP1, AILP1 Aluminium induced protein with YGL and LRDR motifs (.1.2) AT3G15450 44 / 0.0003 Aluminium induced protein with YGL and LRDR motifs (.1.2.3) AT4G27450 42 / 0.001 Aluminium induced protein with YGL and LRDR motifs (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024052 [exp] 1094 / 0 AT5G10240 1013 / 0.0 asparagine synthetase 3 (.1.2) Lus10042281 [exp] 862 / 0 AT3G47340 1068 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10031870 [exp] 833 / 0 AT3G47340 1001 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10024051 [exp] 491 / 3e-170 AT5G39530 283 / 9e-97 Protein of unknown function (DUF1997) (.1) Lus10031300 [exp] 125 / 3e-32 AT5G65010 144 / 2e-40 asparagine synthetase 2 (.1.2) Lus10026376 [exp] 105 / 1e-25 AT3G47340 138 / 3e-38 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10026379 [exp] 66 / 2e-11 AT3G17930 170 / 1e-52 unknown protein Lus10010505 [exp] 57 / 1e-08 AT5G19140 392 / 4e-140 Aluminium induced protein with YGL and LRDR motifs (.1.2) Lus10034038 [exp] 57 / 1e-08 AT5G19140 389 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075700 [exp] 983 / 0 AT5G10240 1039 / 0.0 asparagine synthetase 3 (.1.2) Potri.009G072900 [exp] 862 / 0 AT3G47340 1027 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.001G278400 [exp] 855 / 0 AT3G47340 1018 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.017G087500 [exp] 307 / 6e-99 AT5G39530 301 / 1e-103 Protein of unknown function (DUF1997) (.1) Potri.008G203400 [exp] 57 / 1e-08 AT5G19140 397 / 4e-142 Aluminium induced protein with YGL and LRDR motifs (.1.2) Potri.011G122100 [exp] 47 / 3e-05 AT4G27450 428 / 7e-154 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.001G403000 [exp] 44 / 0.0002 AT4G27450 436 / 3e-157 Aluminium induced protein with YGL and LRDR motifs (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00733 [flax] [poplar] Asn_synthase Asparagine synthase CL0039 [flax] [poplar] PF09366 [flax] [poplar] DUF1997 Protein of unknown function (DUF1997)
Representative CDS sequence Show only first row Show all	>Lus10041698 pacid=23146919 polypeptide=Lus10041698 locus=Lus10041698.g ID=Lus10041698.BGIv1.0 annot-version=v1.0 ATGAGTGAAATTGCAGCGGTGGGTTCATTCTTTCCATCAACCCAGAAGAAGCAGCAACTGCTTAATTGCAATCTTACTAGAGGAGAAACTACGTGGAAGA AGAAGGTTGAGAGGAAGCAATGGGGGCTGCAACGGTATGCTTCAAGGTCATCAAGGCAGATAAAGAATCAAATATCAGTGCAGAACCCAGCCACATACTC TTCAAGCATGAGCACAAATATAGCTCTTTATGAGCCTCCTGGGGCTTCCTTTGATAATTATCTTGAAGACAAACCCAGAGTTTTCCAGGCAATGTTTCCT GATAAGCAGAGGAGCCAACAACTAACTCAGGAAGAGTGGAGAATACAAATGTTGCCGATAAACTTCTTGTTCCTAACGGTATGGCCAACAGTTGATGTGA GGTTGAGTTGCAAAAATGGAGGCAGAGATTACCCACCACACATAAAAAAGGTCATGGAGCTCGAGATTCTACGGTGGGAGCTGAAGGGGCTTGATGGTGT GATTGAACCATCTCATTTCTCACTTGGTGTGAAAGGAGCATTGTACGCTGACAGAGGAGGAACCCGAAGCCGACTTAAAGGAAAACTGGAGATGGAGATC AGCTTTGTTCTGCCTCCAGTCCTTGCTTTGGTACCTGAAGATATTCGCAACAACGTTGCTGAATCGGTGCTTACCACATTGGTTCAAAACATGAAGCACA AGGTTAACAGTAGCTTGCTGTCGGACTATAGCAAGTTGAGGCACAGGGGTCCTGATTGGAGTGGATTACACTGCTTTGAAGATTGCTATCTAGCTCACCA GCGTTTGGCCATTGTTGACCCTGCTTCAGGGGATCAGCCTCTTTACAATGAAGACAAGTCTGTTGTTGTCACTGTTAATGGGGAGATATACAATCACAAG GAGTTGCGTGAGAAATTGAAGTCTCATCAGTTCCGGACAGGCAGTGACTGCGAAGTGATTGCCCATCTTTATGAAGAGTATGGAGAGGATTTCGTGGGCA TGCTGGATGGCATGTTTTCCTTTGTCCTTCTTGATACTCGTAACAAAACTTTCATTGCAGCTCGGGATGCCATTGGTATTACACCCCTTTATATGGGCTG GGGCCTTGATGGATCTGTGTGGTTTGCTTCAGAAATGAAAGCATTGAGTGATGATTGCGAGCGATTTGTGTCTTTCCTGCCGGGTCATATTTATTCAAGC AAAGAAGCAACCCTTCGAAGGTGGTACAACCCACCATGGTACACAGAGAAAGTACCTTCAACCCCATATGATCCACTATATCTACGGGCGGCTTTCGAGA AGGCATGTACTGGACCCCTCTTAAGTGAAGCTGGTTCTTACAAATGCCACTGCGCTAATTTGAAATGTCAACATGCTGTGGCTAAGCGTCTTATGACAGA TGTGCCATTTGGAGTACTTCTCTCAGGAGGGCTTGATTCTTCACTTGTTGCTGCTGTGGCTTCTAGGAAGATGGTTGAGTTAGAATCTGCTTGCCAGTGG GGAACACAATTGCATAGCTTTTGCGTTGGTTTGAAGGGTTCCCCTGATTTGAAAGCTGCTAGAGAGGTTGCTGATTATCTGCACACACGCCACCATGAGT TTCATTTTACGGTCCAGGAAGGAATTGATGCCCTTGAGGAAGTCATTTACCATATTGAAACATATGATGTGACCACTATTAGAGCAAGCACCCCAATGTT CCTTATGTCTCGAAAAATCAAGTCGCTTGGTGTGAAAATGGTACTATCTGGGGAAGGTTCAGATGAAATCTTTGGAGGCTACTTGTATTTCCACAAGGCA CCCAACAAGGAGGAGCTTCACCAAGAGACTTGCCGTAAGATTAAAGCTCTGCATCTTTATGATTGCTTGAGGGCCAATAAGTCAACTTCAGCATGGGGTC TGGAAGCTCGCGTACCCTTTCTGGATAAAGAGTTCATAGATGTTGCAATGAGCATAGATCCGGAATGGAAGATGATCCGGCCTGATCTTGGAAGGATTGA GAAGTGGATATTGCGCAACGCATTTGATGATGAGAAGAACCCATATCTTCCGAAGCACATATTGTACAGGCAGAAAGAACAGTTCAGTGATGGAGTTGGA TATAGCTGGATTGATAGATTGAAGGATCATGCAGACAAGCAAGTTACAGATGCAATGTTGATGAATGCAAGCTTTGTATACACGGAGAACACTCCTACCA CGAAAGAAGCATATTACTACAGGACTATATTCGAGAAGTTCTTCCCCAAGAGTGCGGCAAGGGCAACTGTTCCAGGAGGTCCAAGCATCGCATGCAGTAC TGCAAAAGCAGTTGAATGGGATGCAAGTTGGTCCAAGAATCTCGACCCATCTGGCCGTGCTGCCATTGGAGTTCACGAAGATGCTTACAAGAAAACGGAG GATGCTAAGACTCCCGTGAATGGTACAGCAACTGCGTAA
AA sequence Show only first row Show all	>Lus10041698 pacid=23146919 polypeptide=Lus10041698 locus=Lus10041698.g ID=Lus10041698.BGIv1.0 annot-version=v1.0 MSEIAAVGSFFPSTQKKQQLLNCNLTRGETTWKKKVERKQWGLQRYASRSSRQIKNQISVQNPATYSSSMSTNIALYEPPGASFDNYLEDKPRVFQAMFP DKQRSQQLTQEEWRIQMLPINFLFLTVWPTVDVRLSCKNGGRDYPPHIKKVMELEILRWELKGLDGVIEPSHFSLGVKGALYADRGGTRSRLKGKLEMEI SFVLPPVLALVPEDIRNNVAESVLTTLVQNMKHKVNSSLLSDYSKLRHRGPDWSGLHCFEDCYLAHQRLAIVDPASGDQPLYNEDKSVVVTVNGEIYNHK ELREKLKSHQFRTGSDCEVIAHLYEEYGEDFVGMLDGMFSFVLLDTRNKTFIAARDAIGITPLYMGWGLDGSVWFASEMKALSDDCERFVSFLPGHIYSS KEATLRRWYNPPWYTEKVPSTPYDPLYLRAAFEKACTGPLLSEAGSYKCHCANLKCQHAVAKRLMTDVPFGVLLSGGLDSSLVAAVASRKMVELESACQW GTQLHSFCVGLKGSPDLKAAREVADYLHTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKA PNKEELHQETCRKIKALHLYDCLRANKSTSAWGLEARVPFLDKEFIDVAMSIDPEWKMIRPDLGRIEKWILRNAFDDEKNPYLPKHILYRQKEQFSDGVG YSWIDRLKDHADKQVTDAMLMNASFVYTENTPTTKEAYYYRTIFEKFFPKSAARATVPGGPSIACSTAKAVEWDASWSKNLDPSGRAAIGVHEDAYKKTE DAKTPVNGTATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10041698 [exp]	0	1
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	1.4	0.9401
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10041523 [exp]	3.9	0.8848
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10023161 [exp]	6.9	0.8917
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10012568 [exp]	7.1	0.9350
AT2G17030			F-box family protein with a do...		Lus10021517 [exp]	7.1	0.8531
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	8.0	0.9016
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10041071 [exp]	8.1	0.9230
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016407 [exp]	8.5	0.8992
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	12.2	0.9114
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	12.5	0.9162

Compare expression of checked genes

Lus10041698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.