Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29090 527 / 0 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT5G19730 273 / 1e-89 Pectin lyase-like superfamily protein (.1) AT2G21610 229 / 4e-73 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G47500 221 / 6e-70 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT2G36700 218 / 3e-69 Pectin lyase-like superfamily protein (.1) AT2G36710 219 / 1e-68 Pectin lyase-like superfamily protein (.1) AT5G07430 214 / 4e-67 Pectin lyase-like superfamily protein (.1) AT5G55590 206 / 8e-64 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT3G17060 204 / 1e-63 Pectin lyase-like superfamily protein (.1) AT1G05310 204 / 7e-63 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026047 [exp] 605 / 0 AT3G29090 548 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10014338 [exp] 604 / 0 AT3G29090 545 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10024050 [exp] 327 / 1e-113 AT3G29090 258 / 4e-87 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10012942 [exp] 273 / 9e-90 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 271 / 2e-89 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 270 / 1e-88 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 261 / 4e-86 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 262 / 1e-85 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 238 / 2e-76 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G128820 [exp] 572 / 0 AT3G29090 562 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.018G068400 [exp] 285 / 2e-94 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 263 / 3e-86 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.017G087300 [exp] 255 / 6e-85 AT3G29090 271 / 1e-91 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.014G117100 [exp] 250 / 6e-81 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 248 / 2e-80 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.006G120100 [exp] 228 / 6e-72 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 220 / 3e-69 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 218 / 8e-69 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G112800 [exp] 218 / 8e-69 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10041699 pacid=23147053 polypeptide=Lus10041699 locus=Lus10041699.g ID=Lus10041699.BGIv1.0 annot-version=v1.0 ATGGCGGGCCTAGTAATAACGGTGGCACAGGACGGCACCGGCGACTTCACCACCGTCCAGGAAGCAGTCGACGCCGTGCCCTTCGGCAATAGCGTCCGGA CCATAATCCACGTCTGCCCTGGGGTTTACAGGCAGCCCGTTTATGTTCCCAAGACTAAAAACTTCGTAACCCTGGCAGGTTTAAGCCCCGAGGACACCAT CCTTACCTGGAACAACACCGCCTCCATGATTGATCACCACCAGGGAGCAAGGTTAATTGGTACAGGGACGTTTGGTTGTGGGAGTGTGATTGTGGAAGGA GAAGATTTCATCGCTGAGAATATCACTTTCGAGAATTCCGCTCCTGAGGGATCAGGTCAAGCTGTGGCACTGAGAGTGACAGCAGATCGTTGTGGTTTCT ACAATTGCAGGTTCCTTGGCTGGCAGGATACACTGTATTTGCATTATGGGAAACAGTACCTGAAGAATTGCTATATCGAAGGAAGTGTGGACTTTATTTT CGGGAACAGTACTGCTCTACTTGAACATTGTCATATCCATTGTAAATCAGAGGGTTTTATTACTGCACAAGGCCGAAAATCTTCTCAAGAGTCGACTGGT TATGTGTTTTTGAGATGTGTAATCACAGGTAATGGAAATGCATCATACATGCATCTTGGACGACCTTGGGGACCATTTGGAAGGGTAGTATTTGCGTACA CTTACATGGATCATTGCATTAGTCTTGGAGGATGGAATAACTGGGACAATGTTGAGAATGAGAGAAGTGCTTGCTTTTATGAATACAAATGCTTCGGGCC AGGTAGTTGCCCATCTGGACGAGTAGGGTGGTGTAGAGAATTGATAGACGAAGAAGCGGATCAATTTGTCATGCACGGATTCATTGATCCGAATCCAGAA ATGTCATGGCTTGCGCAAAGAATGGCAGTGAGGATACCACATTCTGCCTAG
AA sequence Show only first row Show all	>Lus10041699 pacid=23147053 polypeptide=Lus10041699 locus=Lus10041699.g ID=Lus10041699.BGIv1.0 annot-version=v1.0 MAGLVITVAQDGTGDFTTVQEAVDAVPFGNSVRTIIHVCPGVYRQPVYVPKTKNFVTLAGLSPEDTILTWNNTASMIDHHQGARLIGTGTFGCGSVIVEG EDFIAENITFENSAPEGSGQAVALRVTADRCGFYNCRFLGWQDTLYLHYGKQYLKNCYIEGSVDFIFGNSTALLEHCHIHCKSEGFITAQGRKSSQESTG YVFLRCVITGNGNASYMHLGRPWGPFGRVVFAYTYMDHCISLGGWNNWDNVENERSACFYEYKCFGPGSCPSGRVGWCRELIDEEADQFVMHGFIDPNPE MSWLAQRMAVRIPHSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10041699 [exp]	0	1
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Lus10025557 [exp]	1.0	0.9646
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10028625 [exp]	4.2	0.9557
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	7.3	0.9589
AT5G65030			unknown protein		Lus10026049 [exp]	8.2	0.9587
AT3G04970			DHHC-type zinc finger family p...		Lus10018967 [exp]	10.6	0.9488
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	10.8	0.9607
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10042174 [exp]	11.2	0.9581
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10004264 [exp]	15.7	0.9279
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	16.5	0.9552
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	16.7	0.9549

Compare expression of checked genes

Lus10041699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.