Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39880 190 / 4e-62 Ribosomal protein L23/L15e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024048 [exp] 312 / 1e-110 AT4G39880 188 / 1e-61 Ribosomal protein L23/L15e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075500 [exp] 223 / 2e-75 AT4G39880 191 / 1e-62 Ribosomal protein L23/L15e family protein (.1) Potri.007G093100 [exp] 116 / 8e-34 AT4G39880 90 / 1e-23 Ribosomal protein L23/L15e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00276 [flax] [poplar] Ribosomal_L23 Ribosomal protein L23
Representative CDS sequence Show only first row Show all	>Lus10041700 pacid=23146851 polypeptide=Lus10041700 locus=Lus10041700.g ID=Lus10041700.BGIv1.0 annot-version=v1.0 ATGGGGAGCAGGCTAGGGAGAAGAGTGATTCACTTCGCAAACCTTCCGATCAAGCTCCTAATGCCCAAGACCTACAACAACATCGACGAAATCGCCCTCA AGACCATCCCATCCGCTTCCAAGATCGAAATCAAGCGCGTGCTCGAGTCCCTCTACGGCTTCGACGTCGACAAGGTCCGCACTCTCAACATGGAAGGCAA GAAGAAGAAGCGCGGCGGACTTCTCTTCGCCAAGCCTGACTACAAAAAGGCCTACGTCACCCTCAAGACGCCGCTATCTCTGTCTCCCGATTTGTTCCCC CTCAAGGTCGTCGAGCAGGAGAAGGAGAGGATGAACAAGCAGCAGAGGTCCGGCGTCGTGGAGGACGGCGGAGATAAAAAGCACTGGCTCGAAGATAGGA GAGGGGAGAAGGACCGGAACGAGATCCAAGGAAGTAGAGGAGGAAGTAGCGGATACAAGGGGCGACGTGGTGATGCTGCGGCGGAGAAGCTCAAGTTCCC TTGGAGCAGCATGAGGACAGCAAAGTAG
AA sequence Show only first row Show all	>Lus10041700 pacid=23146851 polypeptide=Lus10041700 locus=Lus10041700.g ID=Lus10041700.BGIv1.0 annot-version=v1.0 MGSRLGRRVIHFANLPIKLLMPKTYNNIDEIALKTIPSASKIEIKRVLESLYGFDVDKVRTLNMEGKKKKRGGLLFAKPDYKKAYVTLKTPLSLSPDLFP LKVVEQEKERMNKQQRSGVVEDGGDKKHWLEDRRGEKDRNEIQGSRGGSSGYKGRRGDAAAEKLKFPWSSMRTAK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39880			Ribosomal protein L23/L15e fam...		Lus10041700 [exp]	0	1
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	2.6	0.9720
AT5G35530			Ribosomal protein S3 family pr...		Lus10030502 [exp]	2.8	0.9700
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10016378 [exp]	2.8	0.9641
AT5G44500			Small nuclear ribonucleoprotei...		Lus10013108 [exp]	4.5	0.9669
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	5.7	0.9673
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030620 [exp]	5.7	0.9585
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	5.9	0.9642
AT2G47790			Transducin/WD40 repeat-like su...		Lus10001029 [exp]	6.9	0.9558
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10012833 [exp]	7.1	0.9597
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10015198 [exp]	8.4	0.9666

Compare expression of checked genes

Lus10041700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.