Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44040 460 / 1e-163 Dihydrodipicolinate reductase, bacterial/plant (.1) AT3G59890 449 / 2e-159 Dihydrodipicolinate reductase, bacterial/plant (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024047 [exp] 627 / 0 AT2G44040 460 / 7e-164 Dihydrodipicolinate reductase, bacterial/plant (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001900 [exp] 453 / 4e-161 AT3G59890 457 / 1e-162 Dihydrodipicolinate reductase, bacterial/plant (.1.2) Potri.007G145900 [exp] 436 / 3e-154 AT3G59890 445 / 2e-157 Dihydrodipicolinate reductase, bacterial/plant (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01113 [flax] [poplar] DapB_N Dihydrodipicolinate reductase, N-terminus CL0139 [flax] [poplar] GADPH_aa-bio_dh PF05173 [flax] [poplar] DapB_C Dihydrodipicolinate reductase, C-terminus
Representative CDS sequence Show only first row Show all	>Lus10041701 pacid=23146716 polypeptide=Lus10041701 locus=Lus10041701.g ID=Lus10041701.BGIv1.0 annot-version=v1.0 ATGACGGCGATGGCGCACGTTTCATTCGGATTATTGCCCAAATTTACCTTCTCGCCAGGCACCACGCCGGCGAAAACTGGATTTTCCATTCGGAGACGAC AGTCTTCTCTTGTAGTGTTAGCCACGTCCAGCAACGGTGTTCCGATCATGGTAAATGGCTGTAGTGGGAAAATGGGGAAAGCTGTCATCAAAGCAGCAGA TTCTGCTGGCCTTCAGATTCTTCCTGTATCATTTGGCTCAGAAGAAGAGTCTGGACAAATTGTGGACGTCTGTGGTAAAAAAATCGAGATATATGGTCCT TCCACACGAGAGGCTGCCCTAGCATCTGCCTATGATGAACATCCGAACATGATAGTTGTTGACTATACCGTTCCTGCTGCAGTGAATCCTAATGCTGAGA CCTATTGCAAAGTCGGTGTGCCTTTCGTTATGGGAACCACAGGCGGAGACAGGGATAAGCTCTATAAGACTGTAGAGGACGCAAAAGTTTATGCCGTGAT ATCCCCTCAAATGGGGAAACAGGTTGTTGCTTTTCTGGATGCCATGGAGACTATGGCCGAAAGATCTCCTGGTGCTTTCTCTGGGTATAAGCTTCAGGTG ATGGAGTCTCATCAAGCAGGAAAGTTGGACGTCTCTGGAACTGCCAAGGCTGTAATAAATTGCTTCCAGAAATTGGGGGTGGAATTTGACATGGATGAGA TTGAAGTCGACAATCTATCTGATCGATGTCTGTTTGACTTTGGTAAGGTGGAAATGATACGAGATCCCAAGCAACAAGCTGAGATGGTTGGAGTTCCGGA CGAGTACCTATCTGGGCATGCCTTCCATATGTATCATCTAACATCACCAGATGAGACCGTGTCCTTTGAGTTTCAACACAATGTCTGCGGTAGGTCAATA TACGCAGAAGGTACTGTTGATGCTATAATCTTCCTGGCGAAGAAGGTAATGCTGAAAGAAGATAAGCGGATCTACAATATGATTGACGTGCTGAGAGAGG GCAACATGAGATAG
AA sequence Show only first row Show all	>Lus10041701 pacid=23146716 polypeptide=Lus10041701 locus=Lus10041701.g ID=Lus10041701.BGIv1.0 annot-version=v1.0 MTAMAHVSFGLLPKFTFSPGTTPAKTGFSIRRRQSSLVVLATSSNGVPIMVNGCSGKMGKAVIKAADSAGLQILPVSFGSEEESGQIVDVCGKKIEIYGP STREAALASAYDEHPNMIVVDYTVPAAVNPNAETYCKVGVPFVMGTTGGDRDKLYKTVEDAKVYAVISPQMGKQVVAFLDAMETMAERSPGAFSGYKLQV MESHQAGKLDVSGTAKAVINCFQKLGVEFDMDEIEVDNLSDRCLFDFGKVEMIRDPKQQAEMVGVPDEYLSGHAFHMYHLTSPDETVSFEFQHNVCGRSI YAEGTVDAIIFLAKKVMLKEDKRIYNMIDVLREGNMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44040			Dihydrodipicolinate reductase,...		Lus10041701 [exp]	0	1
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	3.9	0.8886
AT3G16810		APUM24	pumilio 24 (.1)		Lus10016836 [exp]	6.6	0.8744
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	6.9	0.8967
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10043479 [exp]	7.5	0.8361
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10043295 [exp]	8.2	0.9091
AT1G64880			Ribosomal protein S5 family pr...		Lus10034602 [exp]	11.1	0.8509
AT3G21540			transducin family protein / WD...		Lus10033802 [exp]	11.3	0.8946
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	11.4	0.8682
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Lus10023728 [exp]	11.9	0.9032
AT1G06590			unknown protein		Lus10043409 [exp]	13.0	0.8566

Compare expression of checked genes

Lus10041701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.