Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39900 119 / 1e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024045 [exp] 419 / 1e-150 AT4G39900 131 / 4e-37 unknown protein Lus10018373 [exp] 41 / 0.0003 AT4G21215 87 / 3e-21 unknown protein Lus10007639 [exp] 40 / 0.0004 AT4G21215 83 / 1e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093200 [exp] 209 / 1e-67 AT4G39900 171 / 9e-53 unknown protein Potri.008G145000 [exp] 44 / 2e-05 AT4G39900 45 / 3e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041703 pacid=23146943 polypeptide=Lus10041703 locus=Lus10041703.g ID=Lus10041703.BGIv1.0 annot-version=v1.0 ATGTCTGCTTATCCATCCCTCAAAGGAGAGGATATCCACCCGCCGGCGGTCTTCGACGGGGGTTGCAATCGTCCAGTCGACGGATCATACTTCCAGTTGT TGAATCCAGGGACTGGATTTGATGTTGACAACCAGCATTGTTCTCTAGATGTATTGCCCATAGTTTTGAAGGAAGTTCCTTCTTTGGAAGATGACACTTC CTTCCATGCTTCACATGGTCTAGGACTATACAGCATTTCCATGATGGAAGACGGCAACAACACCGATCCACAATGTGCGTCACCGCAGCTAGCCTGTTTA AGTGTTGTGGGGCTTCCTGCTCCAACCAAATCCCATACATGCTTAGATTCAGTCGATCTACAAGTTGAAAGTTCAGACGCTTATTCGCCATGCATTGTGG ACATTGGTATCAAGATGGACAAGTTTGAGCAACCGAAATCCGGTGATGCTGCAGCTGGAAGCTTAAAGAATGGGGGTGTGATTACAGGCATGCTTCAGAG ACAAGTGAGCCTAAAAACATGTGGGAAACTAATGGAAGTTTTCGCGAAGTGGAGGAAGTGCAAGCGTGCAGCCTCGCTTGATTCGAGAAGCATTGTTCTC ATGTTCTCAATTTTGTCAAGTTTTGGGACGCTGGTGTTGATATACCTCACCCTGAGAGTTAGGCATGCAGCTGCTGATAGCTTTGGCAGCGCCTAA
AA sequence Show only first row Show all	>Lus10041703 pacid=23146943 polypeptide=Lus10041703 locus=Lus10041703.g ID=Lus10041703.BGIv1.0 annot-version=v1.0 MSAYPSLKGEDIHPPAVFDGGCNRPVDGSYFQLLNPGTGFDVDNQHCSLDVLPIVLKEVPSLEDDTSFHASHGLGLYSISMMEDGNNTDPQCASPQLACL SVVGLPAPTKSHTCLDSVDLQVESSDAYSPCIVDIGIKMDKFEQPKSGDAAAGSLKNGGVITGMLQRQVSLKTCGKLMEVFAKWRKCKRAASLDSRSIVL MFSILSSFGTLVLIYLTLRVRHAAADSFGSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39900			unknown protein		Lus10041703 [exp]	0	1
AT5G55140			ribosomal protein L30 family p...		Lus10011966 [exp]	6.7	0.8329
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10042930 [exp]	7.3	0.8475
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	9.8	0.8040
AT1G19990			unknown protein		Lus10033141 [exp]	12.1	0.8477
AT3G18600			P-loop containing nucleoside t...		Lus10009616 [exp]	15.4	0.8438
AT3G28040			Leucine-rich receptor-like pro...		Lus10037276 [exp]	17.9	0.8369
AT5G09760			Plant invertase/pectin methyle...		Lus10013720 [exp]	19.8	0.7887
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10010215 [exp]	26.1	0.8148
					Lus10027544 [exp]	29.8	0.7510
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028223 [exp]	34.5	0.8236

Compare expression of checked genes

Lus10041703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.