Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22300 812 / 0 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT5G64220 530 / 5e-172 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT5G09410 507 / 3e-164 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT1G67310 303 / 5e-88 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT3G16940 281 / 6e-81 CAMTA calmodulin binding;transcription regulators (.1) AT4G16150 277 / 3e-79 CAMTA calmodulin binding;transcription regulators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024044 [exp] 1604 / 0 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10003405 [exp] 534 / 6e-173 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10036162 [exp] 536 / 6e-170 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10003119 [exp] 320 / 1e-94 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10011352 [exp] 317 / 3e-92 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10016873 [exp] 305 / 3e-89 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10037738 [exp] 296 / 9e-86 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10036455 [exp] 271 / 1e-76 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1) Lus10029852 [exp] 181 / 3e-46 AT2G18750 252 / 1e-71 Calmodulin-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075100 [exp] 739 / 0 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.007G093400 [exp] 725 / 0 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.010G153100 [exp] 427 / 1e-133 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.010G141700 [exp] 386 / 7e-119 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.001G057800 [exp] 320 / 4e-94 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.003G170600 [exp] 310 / 1e-90 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.008G107900 [exp] 286 / 2e-82 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G099733 [exp] 97 / 3e-24 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.005G051500 [exp] 52 / 1e-06 AT4G14750 127 / 6e-33 IQ-domain 19 (.1) Potri.004G210100 [exp] 47 / 6e-05 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0465 [flax] [poplar] PF03859 [flax] [poplar] CG-1 CG-1 domain
Representative CDS sequence Show only first row Show all	>Lus10041704 pacid=23146614 polypeptide=Lus10041704 locus=Lus10041704.g ID=Lus10041704.BGIv1.0 annot-version=v1.0 ATGGCGGAATCTAGTCTCTCCCCCCTCGGAAACCAGCCAGGGTGGAGTGAAGATATTCATCGACTTCTTCAGGAAGCACAACACCGCTGGCTACGACCCC CGGAAATTTGCCAAATTCTTTCGAACTATAAGAAGTTCCGTATATCCCCAGAGCCCCAAAACAGACCACCAAGTGGTTCTATCTTCCTGTTTGACCGCAA GGTGACACGATACTTCAGAAAAGATGGGCACAACTGGAGGAAGAAAAAGGACGGTAAGACAGTAAGAGAAGCTCACGAGAGGCTCAAGTCTGGGAGCATT GATGTCCTGCATTGCTACTATGCTCATGGAGAAGGAAATGAAAATTTTCAAAGAAGGACTTATTGGATGCTTGAAGAGGAACTGTTACATGTAGTTCTTG TTCACTACAGGGACGTAAAGCAGGGAAGTAGTAGGGCGAGTTTCTACCGTGTTAAAGAGACTGCAGAGACTATTTCACATTCACAAAAAACAGATGACGC TAGGATAAATTCTGAGATGGACACTTCTGCTTCATCCAACTATCATTCTGGCACCTACCAAATGCATGCACAAGCCACAAATACGGAAAACTTGGTCGGT GGTGCTAAAGTCTCAGAATACGAGGATGTAGAATCAGTTGAAGCTAACAGTGTTATTGGTAATGGGTTAGCCTATGAATCACGAGGACAAGTTGGCTTAC CAACATGGGAGAATGACTTGGAAAACTGTAATTATGGGACTGAGCACATACCTCCCGACTTCAGAGTTCCAATAAAAGCTGACAATGCACCAACTCATTC CAGACAAGGAGATCTATTAGGTAAGATGTTTATGAGTAGCTTTAGCAAATGGCAGGAGTCCACAAGTCATGAGGCAATCAAAGAACAGTGGCAGCGACCA GATGCACACAATAGCATGAAATCAGAAAAAGAATCGGAGCATCATTCTTCTATGAAGCATCATTTGTTGGATGGTTCTCAGAGAGACGGTCTAACGAAGC TCGATAGTTTCAATCGTTGGATGAGTAATGAACTTGGAGATGTAGATGAGTCGCCAGTACATTCCACTTCAGCAACATACTGGCAGACTGTTGAAAGTGA GGATGGAGTTGATAATTCCAATGTACCCCCTCAATCAGACATGGAACCCTATCTAATGGCCCCTTCCCTCGCCAATGACCAGCTTTTCAGCATCATTGAT TTCTCACCTAGCTGGGTATATGTTGGCACAGAAGTAAAGGTTTTAATCATAGGAAGATTCTTGAAGAGCCAACAGGACCTGAAAACCTATAGATGGTCAT GTATGTTTGGAGAAGTTGAAGTTGCAGCTGAGGTTATAGCCGAAGGTGTTCTCCGGTGCTATAATCCTTTGCTCAGGGCTGGTAGAATTCCATTTTATGT TACTTGCTCAAATAGGACAGCGTGCAGTGAAGTACGCGAGTTTGAATTTCGTGACAGCATTGTCCAAGACATGGACGACACTAATAGTTGTAGCTCTATT GAAATTATCCAAGTACGATTAGGGAAGTTGCTATGCACGAGTCTTGATTCCACTCAGAATTTCAATCAAAGCGATGCAAGTGAAATATCCCAATTGAGCA GCAAGATCAGAGCACTGCTGAAAAAAGATGGCGATGAGTGGGATTTAATGTTGAAGTCCACTTCAGAGGAGGGATTTTCGGCACAGAAAGTGAAGGACCA GCTTCTTCAGAAGCTATTGAAGGAAAAGCTACATGATTGGCTCTTACAGAAGGTAGTTGAAGGCGGGAAGGGTCCCAGTGTACTAGATGAAGGTGGACAA GGGGTCTTGCATTTGGCAGCTGCTTTGGGATATGATTGGGCCCTTGAACCTACAACCGTCGCTGGTGTTAGAGTTGATTTCCGTGATCTTAATGGATGGA CTGCACTTCACTGGGCTGCAAGTTGTGGCAGGGAGCGGACAGTTGCTTCTCTCATAAATCTTGGGGCTGCCCCTGGAGCATTAACAGATCCAACTCCCAG AAATCCCACCAGCATAACACCCGCTGACCTTGCCTCTACAAATGGGCACAAGGGAATCGCTGGTTTCCTTGCCGAATTTGCATTGACTTCACACTTCACA ACACTTGCTGTGGACAGGCTGAATGGTAATGGTGATATCTCTGGTACAAATGTCCAAATGCACTCAGAAGCATGTGTAAACGTAGATTTACCACAAGGAG AATCAATGAAAGACTCGCTAGCTGCGGTCCGTAATGCTGCTCAAGCCGCTGCTCGTATCCACCAAGTATTCAGAGTGCAGTCCTTTCAAAGAAAGCAGGT AAAAGAGAATGGCGATGGCAAGTTAAGAATATCAAAAGAGGAAGCGCTTGCATTAATCAAGGTGAAGGGAAACAAGAAGCTGGACAAGCCAGTAGAAGCT GCTGCAGTTAGGATTCAGAACAAGTTCCGGAGTTGGAAAGGCAGGAGAGAGTTCTTGGTCATTCGCCAACAGATTGTTAAGATTCAGGCCCATGTTAGAG GACACCAGGTCAGGAAAAACTATAGAAAGATCCTATGGTCTGTTGGCATCATGGAGAAGGTGATACTTCGATGGAGAAGGAAACGAAGTGGACTTCGCGG GTTTAAACCGGAGTTGCTTACTGCAAGTAGAAGCATCAAACTACATTCGTCGGCCAGAGAGGATGATTACGATTTCTTTAAAGAAGGAAGGAAGCAAACG GAAGAAAGATCCCTGATTGCTCTTGCGAGGGTGAAGTCTATGGTTCAGTATCCAGATGCCAGAGACCAATACCGCAGACTTCGGAATCAGATCAAGGGGA CTAAGTTGGACACAGGTTCTGAAGCAACACGAATCAGTGACATTGTCGCACTGGAATCACCGTCGGATTATGATACGTTCATGCGTACTGCTTCGCCATC CGATTTGATGAAAAGACGTTGA
AA sequence Show only first row Show all	>Lus10041704 pacid=23146614 polypeptide=Lus10041704 locus=Lus10041704.g ID=Lus10041704.BGIv1.0 annot-version=v1.0 MAESSLSPLGNQPGWSEDIHRLLQEAQHRWLRPPEICQILSNYKKFRISPEPQNRPPSGSIFLFDRKVTRYFRKDGHNWRKKKDGKTVREAHERLKSGSI DVLHCYYAHGEGNENFQRRTYWMLEEELLHVVLVHYRDVKQGSSRASFYRVKETAETISHSQKTDDARINSEMDTSASSNYHSGTYQMHAQATNTENLVG GAKVSEYEDVESVEANSVIGNGLAYESRGQVGLPTWENDLENCNYGTEHIPPDFRVPIKADNAPTHSRQGDLLGKMFMSSFSKWQESTSHEAIKEQWQRP DAHNSMKSEKESEHHSSMKHHLLDGSQRDGLTKLDSFNRWMSNELGDVDESPVHSTSATYWQTVESEDGVDNSNVPPQSDMEPYLMAPSLANDQLFSIID FSPSWVYVGTEVKVLIIGRFLKSQQDLKTYRWSCMFGEVEVAAEVIAEGVLRCYNPLLRAGRIPFYVTCSNRTACSEVREFEFRDSIVQDMDDTNSCSSI EIIQVRLGKLLCTSLDSTQNFNQSDASEISQLSSKIRALLKKDGDEWDLMLKSTSEEGFSAQKVKDQLLQKLLKEKLHDWLLQKVVEGGKGPSVLDEGGQ GVLHLAAALGYDWALEPTTVAGVRVDFRDLNGWTALHWAASCGRERTVASLINLGAAPGALTDPTPRNPTSITPADLASTNGHKGIAGFLAEFALTSHFT TLAVDRLNGNGDISGTNVQMHSEACVNVDLPQGESMKDSLAAVRNAAQAAARIHQVFRVQSFQRKQVKENGDGKLRISKEEALALIKVKGNKKLDKPVEA AAVRIQNKFRSWKGRREFLVIRQQIVKIQAHVRGHQVRKNYRKILWSVGIMEKVILRWRRKRSGLRGFKPELLTASRSIKLHSSAREDDYDFFKEGRKQT EERSLIALARVKSMVQYPDARDQYRRLRNQIKGTKLDTGSEATRISDIVALESPSDYDTFMRTASPSDLMKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	0	1
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	2.0	0.8998
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	2.2	0.9002
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	3.2	0.8804
AT1G23230			unknown protein		Lus10035997 [exp]	4.5	0.8826
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	6.5	0.8669
AT5G03450			Transducin/WD40 repeat-like su...		Lus10026534 [exp]	6.8	0.8240
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022651 [exp]	8.1	0.8246
AT5G43680			unknown protein		Lus10004356 [exp]	8.7	0.8208
AT5G55060			unknown protein		Lus10021546 [exp]	8.7	0.8868
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10026202 [exp]	8.8	0.8425

Compare expression of checked genes

Lus10041704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.