Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39910 683 / 0 ATUBP3 ubiquitin-specific protease 3 (.1) AT2G22310 682 / 0 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT4G24560 135 / 1e-34 UBP16 ubiquitin-specific protease 16 (.1) AT5G57990 132 / 1e-33 UBP23 ubiquitin-specific protease 23 (.1) AT3G14400 130 / 5e-33 UBP25 ubiquitin-specific protease 25 (.1) AT5G65450 128 / 2e-32 UBP17 ubiquitin-specific protease 17 (.1) AT4G31670 127 / 6e-32 UBP18 ubiquitin-specific protease 18 (.1) AT1G17110 120 / 1e-29 UBP15 ubiquitin-specific protease 15 (.1.2) AT2G24640 119 / 1e-29 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G17895 113 / 3e-27 UBP20 ubiquitin-specific protease 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024043 [exp] 767 / 0 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10014333 [exp] 714 / 0 AT4G39910 643 / 0.0 ubiquitin-specific protease 3 (.1) Lus10026041 [exp] 540 / 0 AT4G39910 481 / 8e-172 ubiquitin-specific protease 3 (.1) Lus10036607 [exp] 138 / 2e-35 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10035825 [exp] 137 / 2e-35 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10009273 [exp] 136 / 6e-35 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10032623 [exp] 126 / 2e-31 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043127 [exp] 125 / 3e-31 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10020116 [exp] 123 / 1e-30 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093600 [exp] 733 / 0 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.005G074900 [exp] 732 / 0 AT4G39910 678 / 0.0 ubiquitin-specific protease 3 (.1) Potri.018G107500 [exp] 145 / 6e-38 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 144 / 9e-38 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.005G156900 [exp] 130 / 9e-33 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.002G104800 [exp] 129 / 2e-32 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.003G092400 [exp] 129 / 2e-32 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.011G112800 [exp] 127 / 5e-32 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.001G378900 [exp] 125 / 4e-31 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G394600 [exp] 124 / 5e-31 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10041705 pacid=23146770 polypeptide=Lus10041705 locus=Lus10041705.g ID=Lus10041705.BGIv1.0 annot-version=v1.0 ATGGGTGCGGCTGGTTCAAAACTAGAGAAGGCTCTCGGCGATCAGTTCCCCGAAGGCGAACGATACTTCGGCCTTGAGAATTTCGGCAACACTTGCTACT GCAACAGCGTCTTGCAGGCTCTATACTTTTGTGTACCATTCCGGGAACAATTGCTTGAATACTACGCAAATAACAAATCCATTGCAGATGCGGAAGAGAA TCTATTAACATGTTTGGCTGACTTATTCACACAGATAAGCTCACAGAAGAAGAAAACTGGTGTCATTGCACCCAAGCGCTTTGTCCAGCGGCTGAAAAAA CAAAATGAGCTTTTCCGTAGCTATATGCACCAGGATGCTCATGAATTTTTGAATTTCTTGCTTAATGAACTTGTTGACATACTTGAGAAAGAGGCCAAAG CTGTTAAAATTGATACAGAAACTTCGTCTCCACCTGAAAAGATCGCCAATGGCACAAAGAGTACTCTAGCGAATGGCGTGTCTAAGGAACCTTTAGTTAC TTGGGTGCACAAGAATTTCCAGGGAATACTTACGAATGAGACCAGGTGTCTGCAGTGTGAAACGGTGACAGCTAGAGATGAGACATTCTTTGATTTGAGC TTAGATATAGAGCAGAACAGTTCAATAACTAGCTGTCTGAAGAACTTTAGTTCAACAGAGACTCTTAATGCAGAAGATAAATTTTTCTGTGACAAGTGTT GCAGTTTGCAAGAAGCTCAAAAGAGAATGAAGATAAAGAAGCCTCCCCATATCTTGGTCATCCACCTCAAGAGGTTCAAGTATATCGAGCAGTTGGGCAG GTACAAGAAGTTATCATACCGGGTAGTGTTCCCCCTTGAACTAAAACTGAGCAATACAATGGAAGATTCAGACATCGAATACTCGCTCTTTGCTGTGGTT GTACATGTTGGAAGCGGGCCGAACCACGGGCACTACGTCAGTCTTGTGAAAAGCCACAATCACTGGTTGTTCTTCGACGACGAAAATGTGGAGATGATTG ATGAGTCGGCCGTCCAAACGTTTTTTGGTTCGGCTCAAGAGTACTCGAGTAACACAGATCACGGGTATATCTTGTTCTACGAGAGCATCACTGCTAACAA GAGCTGA
AA sequence Show only first row Show all	>Lus10041705 pacid=23146770 polypeptide=Lus10041705 locus=Lus10041705.g ID=Lus10041705.BGIv1.0 annot-version=v1.0 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYANNKSIADAEENLLTCLADLFTQISSQKKKTGVIAPKRFVQRLKK QNELFRSYMHQDAHEFLNFLLNELVDILEKEAKAVKIDTETSSPPEKIANGTKSTLANGVSKEPLVTWVHKNFQGILTNETRCLQCETVTARDETFFDLS LDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTMEDSDIEYSLFAVV VHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESITANKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10041705 [exp]	0	1
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10030935 [exp]	2.0	0.8940
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10036520 [exp]	6.7	0.8466
AT5G44090			Calcium-binding EF-hand family...		Lus10022907 [exp]	8.3	0.8623
AT5G28850			Calcium-binding EF-hand family...		Lus10021174 [exp]	8.8	0.8972
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	9.6	0.8854
AT2G27285			Coiled-coil domain-containing ...		Lus10038787 [exp]	9.8	0.8550
AT1G78420			RING/U-box superfamily protein...		Lus10013709 [exp]	10.8	0.8414
AT4G10930			unknown protein		Lus10023068 [exp]	10.8	0.8776
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Lus10024130 [exp]	15.1	0.8638
AT1G78420			RING/U-box superfamily protein...		Lus10005577 [exp]	16.2	0.8773

Compare expression of checked genes

Lus10041705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.