Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10320 1789 / 0 tRNA synthetase class I (I, L, M and V) family protein (.1) AT5G49030 257 / 2e-70 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT5G16715 119 / 7e-27 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT1G14610 99 / 2e-20 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) AT3G23145 83 / 3e-18 zinc ion binding;isoleucine-tRNA ligases;ATP binding;aminoacyl-tRNA ligases;nucleotide binding (.1) AT4G04350 66 / 2e-10 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024041 [exp] 2403 / 0 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10025306 [exp] 291 / 5e-89 AT4G10320 249 / 1e-74 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10043413 [exp] 234 / 6e-63 AT5G49030 1570 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10034171 [exp] 225 / 3e-60 AT5G49030 1530 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10028505 [exp] 166 / 2e-41 AT5G16715 1520 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10009139 [exp] 145 / 5e-35 AT5G16715 1128 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10033331 [exp] 117 / 4e-26 AT1G14610 1580 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10034788 [exp] 110 / 6e-24 AT1G14610 1508 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10015552 [exp] 67 / 8e-11 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G033200 [exp] 1956 / 0 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.007G126501 [exp] 1186 / 0 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.010G014500 [exp] 262 / 5e-72 AT5G49030 1612 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Potri.017G124500 [exp] 135 / 5e-32 AT5G16715 1627 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.005G087850 [exp] 100 / 3e-21 AT1G14610 1503 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.007G004100 [exp] 100 / 4e-21 AT1G14610 1601 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.004G090732 [exp] 95 / 5e-20 AT5G16715 590 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.011G009600 [exp] 69 / 2e-11 AT4G04350 1443 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.003G003900 [exp] 44 / 0.001 AT1G09620 1627 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00133 [flax] [poplar] tRNA-synt_1 tRNA synthetases class I (I, L, M and V) CL0258 [flax] [poplar] DALR PF08264 [flax] [poplar] Anticodon_1 Anticodon-binding domain of tRNA ligase
Representative CDS sequence Show only first row Show all	>Lus10041706 pacid=23146774 polypeptide=Lus10041706 locus=Lus10041706.g ID=Lus10041706.BGIv1.0 annot-version=v1.0 ATGGAAGACGTCTGCGAAGGAAAGGACTTTTCCTTCCCGAAGGAGGAGGAAAAAATTCTCGCCTTCTGGTCGGAAATCCAGGCCTTCAAGACTCAATTGT CACGCTCGGAGTCCCTGCCGGAGTACATTTTCTATGACGGTCCTCCCTTTGCTACCGGCCTTCCTCACTACGGCCACATCCTTGCTGGAACCATCAAGGA TATCGTGACCCGGTACCAGACCACGACCGGCCACCACGTCACGCGGCGGTTCGGATGGGATTGCCATGGCTTGCCGGTAGAGAACGAGATTGATAGGAAG CTTGGGATTAAGAGAAGGGAGGAAGTGTTGCAAATGGGGATTGGTAAGTATAATGAGGAGTGTAGGAGCATTGTTACTCGTTACGTTGAGGAGTGGGAGA AGATTATCACGAGGACTGGGCGCTGGATTGATTTCGATGATGGCTATAAGACTATGGACTTGAAGTTTATGGAGAGTGTCTGGTGGGTTTTTGGTCAGCT TTTTGAGAAGGGTCTTGTTTACAAAGGTTTCAAGGTCATGCCGTATAGCACTGGTTGCAAAACTGTACTATCCAATTTCGAAGCTGGCCAGAATTTTAAG GATGTACCTGATCCTGAAATTATGGTGGCCTTTCCTATTGTTGGTGATCTCCATAATGCTGCGTTTGTGGCCTGGACAACTACGCCCTGGACTCTTCCTA GTAATCTTGCACTTTGTGTCAACCCTACCTTCGATTATGTTAAGGTACGCAACAAGTATTCTGGGAAAGTCTATGTGATTGCAGAATGTCTACTGTCCTC CATTCCCACCGAGAAGCCAAAATCGAGTGATTCAAAGACATCAAGTTCAAAAACAAAGGGCACAAAGACTGAAAACCCAATGGACTCATATGATTTACTA GAGAAAGTCAAGGGCAAAGAACTTGTGAATAAAAAGTATGTGCCACTATTCAATTATTTCCAGGAGTTCTCTGGCACAGCATTCAGAGTTGTGGCTGATA GTTATGTGACATCTGACCGGGGTACTGGAATTGTTCATTGTGCTCCGGCATTTGGAGAAGATGATTACCGTGTTTGCATTGAGAATGAAATAATCAGCAA GGGAGAGAATTTGGTTGTCGCGGTTGATGACGACGGGTGCTTTACTGATAGAATTACTGATTTCCGTGGGCGCTATGTCAAAGATGCAGACAAAGATATT ATCGAGGCAGTGAAGGGAAATGGAAGACTTGTCAAAACTGGAAGCTTTATGCACAGCTACCCATTCTGTTGGAGATCTGACACTCCACTTCTTTATAGAG CTGTTCCAAGCTGGTTTGTTAAAGTGGAAAGTTTGAAAGATCAATTATTGGAAAGCAACAGTCAGACATATTGGGTACCTGGTTATGTGAAGGTTGGGAT TCTTAAGTCCACTCCTTTCTATATGAGAACAGAAGATAAGAGATTCCATAATTGGTTGGAAAATGCAAGAGACTGGGCTATTAGTCGCAGCCGATTTTGG GGTACTCCTCTCCCTGTATGGACCAGTGCAGATGGCGAAGAAATAGTAGTTGTTGATTCTGTCGCTAAACTTGAAAGTCTTTCTGGAGCCAAGGTGTTTG ATCTGCATCGTCACAATATTGATCACATCACAATTCCTTGTAGTCGTGGCCCTGAATTTGGCGTGCTTCGACGCGTTGATGATGTCTTTGATTGTTGGTT TGAGAGCGGGTCGATGCCTTATGCTTACATCCATTATCCTTTTGAGAATGTTGAGTTGTTTGAGAAGAATTTTCCTGGGCATTTTGTGGCTGAAGGACTA GATCAAACTCGTGGATGGTTCTATACTCTCATGGTGTTGTCAACTGCATTATTTGGAAAGCCGGCATTTAGGAATCTTGTATGCAATGGGCTGGTCTTAG CCGAGGATGGTAAAAAGATGAGTAAAAAGTTGAGAAACTACCCATCACCAATGGACGTGATCAATGATTATGGAGCGGATGCTCTAAGATTGTACCTCAT AAATTCCCCAGTTGTCCGAGCTGAAACCTTGCGATTCAAGAAGGATGGAGTATATAATGTTGTGAAAGATGTCTTTCTTCCGTGGTACAATGCTTACAGA TTTCTTGTTCAGAATGCTAAGAGACTTGAGATTGAAGGACTTGCAGTATTTCGTCCTCTTAGTTCATCAGATCTGCAGAAATCTTCTAATGTGCTTGACC AGTGGATCAACTCTGCTACTCAGAGTCTTGTTCATTTTGTTCGCCAAGAAATGGATGCATACAGACTCTACACGGTGGTTCCATATCTTCTGTCATTTCT TGGCAACCTAACCAATGTATATGTTCGTTTCAATCGCAAGAGATTGAAAGGTCGTACTGGGGAAGATGATTGCCGAATTGCTCTTTCCACTCTCTACAAT GTGCTTCTAACTTCTTGCAAAGTGATGTCATCATTCACGCCCTTCTTCACAGAGGTTCTCTATCAAAATTTGCGCAAAGTTAGTGCCGACTCTGAAGAAA GCATTCACTACTGCAGTTATCCTGCGGAAGAGGGAGAGAGAGATGAACGCATTGAGCAAAGTGTCACAAGGATGACGACCATTATCGATCTTGCTCGGAA TATCCGTGAGAGACATAACAAACCTCTCAAGTCACCACTTAGGGAGATGGTGATTGTTCATCCTGATGCAGATTTCCTTGATGATATAGCTGGAAAACTA AGAGAGTATGTGCTAGAGGAACTCAATGTACGATCTCTTGTTCCATGTAAAGACACTTTGAAGTATGCCTCTCTACGTGCGGAGCCCGAGTTCAGTGTGT TGGGTAAACGACTTGGCAAGGATATGGGAGTTATCTCAAAAGTAATAAAATCGATGTCACAGAAAGATATTCTGGAATTTGAGAAAGCAGGAGAGGTCAC TATTAAGTCGCACGTCCTAAAATCAGACGACATTAAGGTTCTTCGAGACTTCAGATGTCCTGATGGCTTGACAGACAAGGAGATTGATGCTGCTGGAGAT GGTGATGTCTTGGTGATTTTGGATTTGCGCCCTGATGAGTCATTGTTTGAGGCTGGTCTTGCTCGTGAGGTGGTGAATAGAATTCAAAAATTGCGGAAAA AGATTGCCCTTGAACCGACTGATGCTGTGGAGGTATACGTCGGCTCCTTGGATGACAATAAGCCAAGGTTGGAAAGAGCTCTTAATTCTCAGGAACTCTA TATCAGAAATGCAATTGGTTCTCCGCTGCTTCCATCGACTGCAATCCCCTCACATGCTGTGATTATTGGTGAAGAGAGTTTCCATGGCATTTCTGGGTTA TCGTTCACCATTTACTTAACAAGGCCAACGCTGGTGTTCAAGTCAGATGCTTGTGCTGAAGTATATGAAGGAAATACAAGATTTGCCCAGATGCTGCAAG TGTACTTGCTATCTAAGGATCATAGCAATTTGAAATCGGAATTTCAACAAGGAAATGGGAAGGTTGATCAAGGTAGATTCAATCGAGAACTTGCCTGCGG TGGAATTGACGTTGGAGAAGCATGTGCACTTGAGTGTCGGAGACCAACATTTGGGAACAACAAAACAATCAGACTTGAAGGGATGCTAATGCTAACAGAT CAGCCTTACACAGGAGTAGAGCGTACATCAACAGAAGAAACCCAGTTGGGGAGGCAAAGAATTGATGCGGCACAATTTGGCTACCCAATCTGCAATCCGG TCGAGTCTCTGTGGGATTAA
AA sequence Show only first row Show all	>Lus10041706 pacid=23146774 polypeptide=Lus10041706 locus=Lus10041706.g ID=Lus10041706.BGIv1.0 annot-version=v1.0 MEDVCEGKDFSFPKEEEKILAFWSEIQAFKTQLSRSESLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQTTTGHHVTRRFGWDCHGLPVENEIDRK LGIKRREEVLQMGIGKYNEECRSIVTRYVEEWEKIITRTGRWIDFDDGYKTMDLKFMESVWWVFGQLFEKGLVYKGFKVMPYSTGCKTVLSNFEAGQNFK DVPDPEIMVAFPIVGDLHNAAFVAWTTTPWTLPSNLALCVNPTFDYVKVRNKYSGKVYVIAECLLSSIPTEKPKSSDSKTSSSKTKGTKTENPMDSYDLL EKVKGKELVNKKYVPLFNYFQEFSGTAFRVVADSYVTSDRGTGIVHCAPAFGEDDYRVCIENEIISKGENLVVAVDDDGCFTDRITDFRGRYVKDADKDI IEAVKGNGRLVKTGSFMHSYPFCWRSDTPLLYRAVPSWFVKVESLKDQLLESNSQTYWVPGYVKVGILKSTPFYMRTEDKRFHNWLENARDWAISRSRFW GTPLPVWTSADGEEIVVVDSVAKLESLSGAKVFDLHRHNIDHITIPCSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGL DQTRGWFYTLMVLSTALFGKPAFRNLVCNGLVLAEDGKKMSKKLRNYPSPMDVINDYGADALRLYLINSPVVRAETLRFKKDGVYNVVKDVFLPWYNAYR FLVQNAKRLEIEGLAVFRPLSSSDLQKSSNVLDQWINSATQSLVHFVRQEMDAYRLYTVVPYLLSFLGNLTNVYVRFNRKRLKGRTGEDDCRIALSTLYN VLLTSCKVMSSFTPFFTEVLYQNLRKVSADSEESIHYCSYPAEEGERDERIEQSVTRMTTIIDLARNIRERHNKPLKSPLREMVIVHPDADFLDDIAGKL REYVLEELNVRSLVPCKDTLKYASLRAEPEFSVLGKRLGKDMGVISKVIKSMSQKDILEFEKAGEVTIKSHVLKSDDIKVLRDFRCPDGLTDKEIDAAGD GDVLVILDLRPDESLFEAGLAREVVNRIQKLRKKIALEPTDAVEVYVGSLDDNKPRLERALNSQELYIRNAIGSPLLPSTAIPSHAVIIGEESFHGISGL SFTIYLTRPTLVFKSDACAEVYEGNTRFAQMLQVYLLSKDHSNLKSEFQQGNGKVDQGRFNRELACGGIDVGEACALECRRPTFGNNKTIRLEGMLMLTD QPYTGVERTSTEETQLGRQRIDAAQFGYPICNPVESLWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10320			tRNA synthetase class I (I, L,...		Lus10041706 [exp]	0	1
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Lus10007993 [exp]	2.0	0.9204
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023426 [exp]	3.2	0.9387
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	3.7	0.9372
AT4G30990			ARM repeat superfamily protein...		Lus10026222 [exp]	5.2	0.9246
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	8.4	0.9146
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	8.8	0.9084
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10040306 [exp]	9.2	0.9008
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Lus10033455 [exp]	9.6	0.8799
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10025853 [exp]	10.7	0.9170
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	11.8	0.9085

Compare expression of checked genes

Lus10041706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.