Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65090 461 / 3e-158 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT5G04980 356 / 1e-118 DNAse I-like superfamily protein (.1.2) AT2G32010 285 / 4e-89 CVL1 CVP2 like 1 (.1.2) AT3G63240 284 / 5e-89 DNAse I-like superfamily protein (.1) AT1G05470 259 / 6e-79 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT2G37440 230 / 3e-70 DNAse I-like superfamily protein (.1.2) AT1G34120 208 / 4e-60 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT2G01900 195 / 7e-57 DNAse I-like superfamily protein (.1) AT4G18010 198 / 4e-56 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G71710 197 / 1e-55 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024041 [exp] 862 / 0 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10033398 [exp] 362 / 2e-119 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 360 / 2e-119 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 355 / 1e-117 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10008934 [exp] 287 / 3e-94 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10042619 [exp] 296 / 3e-92 AT3G63240 587 / 0.0 DNAse I-like superfamily protein (.1) Lus10006904 [exp] 286 / 9e-90 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10025305 [exp] 268 / 2e-83 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2) Lus10024427 [exp] 265 / 7e-78 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G090200 [exp] 515 / 4e-179 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.005G078000 [exp] 511 / 1e-177 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.010G247800 [exp] 383 / 3e-128 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 371 / 8e-124 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.005G212700 [exp] 312 / 7e-100 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.002G050000 [exp] 301 / 1e-95 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G155700 [exp] 290 / 6e-91 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G084300 [exp] 288 / 2e-90 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.015G032200 [exp] 209 / 1e-61 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.012G041600 [exp] 204 / 8e-60 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10041708 pacid=23147036 polypeptide=Lus10041708 locus=Lus10041708.g ID=Lus10041708.BGIv1.0 annot-version=v1.0 ATGACTTCAAAAGGGATGACAAAGAGCCCCACCAGCTCCTTTCCCAGCACTCCTGACAACTCTTCCTCCTCCAGGGCTGCTTCAAGTACTGCTTCTTCTG ACAAGAAGAAGAAGTCAATAATTCCAAAGATCTTTAGCTCAAAGAAAATCAACAGAGGAGGATCCGGCGACGATGTTCTAATTGCATCAGATGGAGATTG TCCTTCCCCTGCTGATGATAACCCAATTTCGAGTTCGACAAAGAAGAAATCATCGGCGGAGTCATCTCCTTTCATGCACAAAAGTATCTCAGAAAGAGGG ACAAGTCCTGGAATTGAAGGCCTCAATCTCTCCAACTTTGATCACTCCATGCCATCATCCACCACAGAAATCAAAGAATTCCGGTTTTTCAGGTTTCAGG AAATCGTTCCACTCAGTGCCGGAAATGTGTTGGTGATAGAAGACAGCGAGCCGGCAGCCAAATGGCTAGCCCTCATAAGCCAAACCATCAACAGGACGAA CTACAACTTTACTCCTACCTCTCCGAATCCGGGTCATAGATCTTCTAATAACAAAGCTCAGAACAGTAAGGAAACGAAAAACCACAATAACTTCTTCCAC AAGCCATCCGTCAAGGTCCTGACGAAAAACCTGAGGGCAGACAGCAGCAGCCTTCTGAAGATCTGCAACTGTGCCGGAGATTTCCCAACGCGAGATAGGC AACATCGAGGGGGAGAATTCAGCGGTCCGCTTCCGATGGGAACCAGGGCAGGTCAGAATTTCGGGCTCGACAGTGACTCGCATAATTCTCCTGCAGCTAA TAGCCCTGGAGGAGCCTCCCCTGGATCCGCCACCAACCAAATGGTGTACAACCTTATCTCTTGCAAGCAGATGGTTGGGATTTTCCTTTCGGTTTGGGCT CGAAAGGAATTGGTCCCCCACATTGGTCACCTCAGAGCATCCTCTTGCGGGACCGGCATCATGGGATGCCTCGGGGAGAAAGAAGGGGATGAGCTGAAGA GGAATTCTGATGTTGCTGAAATCCTGAAGAGCATTCAGTTCCACAAGATTTGCAAGAATCAAATCAGCCGAGCTCCTGAAAGGATACCCGATCACGATCG AGTGCTTTGGTTCGGAGACTTGAACTATCGGATCTCTCTCAGCTACGAAGAAACTAAAGTCCTGCTTGAAGAACACGATTGGGACACCCTTCTGGACAGG GATCAGCTAAATATGGAAAGAGATGCGGGAAGGGTGTTCGGCGAATTCTACGAAGGCAGGATTCTATTCGCTCCCACTTACAAATACTCACATAACTCAG ACTCCTATGCTGGAGAGACCGTAAAGAACAAGAAGAAACGTCGAACACCAGCATGGTGCGATCGAGTATTATGGAAAGGAAGAGGAATGGAGCAAATGTC GTACGCGAGAGTGGAGTCGAGATTCTCGGATCACAGACCGGTCTGCGCAATCTTTTCGGTGGATGTGGAGATGAGTGCGACAAGAAGCAGCAGGTTCAGG AAAGGCTACTCTTGTACAGCTCCAAGGATTGAATATGACGACTGTTTGCCGCATCAAAGACAACACAACTTCTATGGCTACTAA
AA sequence Show only first row Show all	>Lus10041708 pacid=23147036 polypeptide=Lus10041708 locus=Lus10041708.g ID=Lus10041708.BGIv1.0 annot-version=v1.0 MTSKGMTKSPTSSFPSTPDNSSSSRAASSTASSDKKKKSIIPKIFSSKKINRGGSGDDVLIASDGDCPSPADDNPISSSTKKKSSAESSPFMHKSISERG TSPGIEGLNLSNFDHSMPSSTTEIKEFRFFRFQEIVPLSAGNVLVIEDSEPAAKWLALISQTINRTNYNFTPTSPNPGHRSSNNKAQNSKETKNHNNFFH KPSVKVLTKNLRADSSSLLKICNCAGDFPTRDRQHRGGEFSGPLPMGTRAGQNFGLDSDSHNSPAANSPGGASPGSATNQMVYNLISCKQMVGIFLSVWA RKELVPHIGHLRASSCGTGIMGCLGEKEGDELKRNSDVAEILKSIQFHKICKNQISRAPERIPDHDRVLWFGDLNYRISLSYEETKVLLEEHDWDTLLDR DQLNMERDAGRVFGEFYEGRILFAPTYKYSHNSDSYAGETVKNKKKRRTPAWCDRVLWKGRGMEQMSYARVESRFSDHRPVCAIFSVDVEMSATRSSRFR KGYSCTAPRIEYDDCLPHQRQHNFYGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65090		DER4, MRH3, BST...	DEFORMED ROOT HAIRS 4, BRISTLE...		Lus10041708 [exp]	0	1
					Lus10018446 [exp]	2.8	0.8270
					Lus10001825 [exp]	5.5	0.8589
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	9.8	0.8220
					Lus10008923 [exp]	11.0	0.7368
AT5G15110			Pectate lyase family protein (...		Lus10030791 [exp]	12.6	0.8210
AT5G01130			Protein of unknown function (D...		Lus10003164 [exp]	14.0	0.6061
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	14.1	0.8048
					Lus10003825 [exp]	17.0	0.8015
AT5G56990			unknown protein		Lus10029528 [exp]	18.3	0.8015
AT4G37860			SPT2 chromatin protein (.1)		Lus10007985 [exp]	19.6	0.7559

Compare expression of checked genes

Lus10041708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.