Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10120 344 / 1e-113 EIL Ethylene insensitive 3 family protein (.1) AT5G65100 320 / 3e-103 EIL Ethylene insensitive 3 family protein (.1) AT2G27050 299 / 1e-94 EIL AtEIL1, EIL1 ETHYLENE-INSENSITIVE3-like 1 (.1) AT3G20770 297 / 1e-93 EIL AtEIN3, EIN3 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) AT1G73730 283 / 7e-89 EIL AtEIL3, ATSLIM, SLIM1, EIL3 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) AT5G21120 241 / 3e-73 EIL EIL2 ETHYLENE-INSENSITIVE3-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014331 [exp] 471 / 7e-163 AT5G65100 351 / 1e-116 Ethylene insensitive 3 family protein (.1) Lus10031817 [exp] 286 / 1e-89 AT1G73730 555 / 0.0 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Lus10031245 [exp] 279 / 7e-87 AT1G73730 556 / 0.0 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Lus10024040 [exp] 230 / 2e-73 AT5G10120 45 / 7e-06 Ethylene insensitive 3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G197400 [exp] 307 / 2e-97 AT3G20770 724 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.008G011300 [exp] 300 / 2e-94 AT3G20770 560 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.009G159200 [exp] 298 / 1e-93 AT3G20770 704 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.010G247500 [exp] 293 / 2e-91 AT3G20770 578 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.001G015900 [exp] 291 / 2e-91 AT1G73730 494 / 8e-170 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.003G210500 [exp] 282 / 5e-88 AT1G73730 516 / 5e-178 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.001G015966 [exp] 0 / 1 AT1G73730 239 / 6e-76 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04873 [flax] [poplar] EIN3 Ethylene insensitive 3
Representative CDS sequence Show only first row Show all	>Lus10041709 pacid=23146876 polypeptide=Lus10041709 locus=Lus10041709.g ID=Lus10041709.BGIv1.0 annot-version=v1.0 ATGGTGGTAATTCACGGCGAGATCGAAGTAGTTGAAGAAGCGGAAGAAATGGAATTAGACGAAGCTGAAGAAGCTGATCAAGAACCAGAAGAAGAAGAAG ATGATGACTCAATTAGCTACGATGATCTCAAGAAACGGATGTGGAAGGATCGATTGCGCCTCCAGAAGCTGGAAGAGAAGCGAGGTACTACTACTACTTC TACTGGCAGCAGCAAGGAATTGATAACGAAACCCCAATCTTCTTCCAACAAACAGCTAGAAGCTTCTCGAAGGAAGAAGACTGCTCGAGCTCAGGACTCC ATCCTCAAATACATGGTCAAAATCATGGAGGTTTGTCAAGGTCAAGGATTCGTCTACGGGATCATCCCCGAGCGGGGGAAGCCCGTCAGCGGTTCCTCCG ATAGCCTCCGCCACTGGTGGAAGGACGACGCTCCCGAGGCCGTCTTCCAATTCCAGTCATCCACCCTTTCCCCAGCCGCCGTAGCTGCAGCGGCGGCGGC GCTGCCGAGGCTCTACGAGCTCCAGGACACCACGCTCGGATCCCTGATTTCCGCGCTGATGCAGCACTGCGTCCCGCCGCAGCGGCGATTCCCTCTCGAG AGAGGTTTAGCGCCGCCGTGGTGGCCGACCGGAGACGAGAATTGGTGGGAGGAGCAAGGCGTCGCGGCGAAGGAGCACGGGCCTCCGCCGTACCGGAAGC CGCACGATTTGAAGAAGTCGTGGAAGGTGAGTTTGTTGACGGCGGTGATCAAGCACATGGCGCCGGATTTTCGCCGGATGCGGCGGCTTGTTAGCCACTC CAAGTGCTTGCAGGACAAGATGACGGCGAGCGAGTCGGCGATCTGGTCTAACGTCGTAAGCCAGGAGGAATCTCTTCTCTCGGAAAAGCTCACCAATAAC CTCCACATCTCTGAAACAGTGGGATCCGCTTCCACCTCCTCCGCTATTATCAAGCCGGAGAAGAGGAAGAAGAGTCGCTTCGTCATATCAGAGGCGGAAG ACGAAGAAGAAACTGAAACAGAGGAGGTTGTGTATCCCTGCCGAAACGAGATGTGCCCGCAGAGCAAGCTAGGGTTAGGGTTTAGTGACAAGAACACCAG ATCTGTTCATCAATTAGAGTGCGCGTATCCAGCAAAATCACCTGAAGATACCAGTCGGGAAAACAGCGGCAGCGAGGACTATCCTTCAGTCGTCTGCAGC AGCACTGTTTCCTTGTTGAGCACTGATCAGAGTAGTAGTCAATTGTTGAGCCCTCGTGAGCTGAGCGTCACCGATTGGGCAAACATGGTGTTGGAAAGTG CCAACGTCTACGATCCACCATTGGAAACAGGGGAAGGAGTTGCAGAGTATTGGACGAGTGAGCGCAGCGGCGGAATTGAAGAATTAGGGTACGAGATGCA GGAGAGAGGAGGAGAAGAAGAAGAGTTGGATTTGAATCTACAACCATGGTCGTCGTTGGATGATCGGAATGGCGTTGCTGATACAACATCAATCTGGGAT CTAGGTTACGAAGAACCAGCTAGCCCCCCAAACTAA
AA sequence Show only first row Show all	>Lus10041709 pacid=23146876 polypeptide=Lus10041709 locus=Lus10041709.g ID=Lus10041709.BGIv1.0 annot-version=v1.0 MVVIHGEIEVVEEAEEMELDEAEEADQEPEEEEDDDSISYDDLKKRMWKDRLRLQKLEEKRGTTTTSTGSSKELITKPQSSSNKQLEASRRKKTARAQDS ILKYMVKIMEVCQGQGFVYGIIPERGKPVSGSSDSLRHWWKDDAPEAVFQFQSSTLSPAAVAAAAAALPRLYELQDTTLGSLISALMQHCVPPQRRFPLE RGLAPPWWPTGDENWWEEQGVAAKEHGPPPYRKPHDLKKSWKVSLLTAVIKHMAPDFRRMRRLVSHSKCLQDKMTASESAIWSNVVSQEESLLSEKLTNN LHISETVGSASTSSAIIKPEKRKKSRFVISEAEDEEETETEEVVYPCRNEMCPQSKLGLGFSDKNTRSVHQLECAYPAKSPEDTSRENSGSEDYPSVVCS STVSLLSTDQSSSQLLSPRELSVTDWANMVLESANVYDPPLETGEGVAEYWTSERSGGIEELGYEMQERGGEEEELDLNLQPWSSLDDRNGVADTTSIWD LGYEEPASPPN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65100	EIL		Ethylene insensitive 3 family ...		Lus10041709 [exp]	0	1
AT1G18520		TET11	tetraspanin11 (.1)		Lus10009607 [exp]	4.0	0.6293
AT5G49180			Plant invertase/pectin methyle...		Lus10003968 [exp]	9.1	0.6775
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10004039 [exp]	9.2	0.6879
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10016437 [exp]	12.5	0.6761
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10039134 [exp]	18.9	0.6693
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	26.7	0.6526
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	28.1	0.6483
AT1G15230			unknown protein		Lus10025791 [exp]	28.5	0.6623
AT5G40460			unknown protein		Lus10022268 [exp]	30.3	0.6487
AT5G02220			unknown protein		Lus10001570 [exp]	32.9	0.6249

Compare expression of checked genes

Lus10041709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.