Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39790 606 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 332 / 4e-103 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 201 / 3e-54 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 197 / 3e-53 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 194 / 4e-52 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 190 / 3e-51 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 169 / 4e-44 Protein of unknown function (DUF630 and DUF632) (.1) AT2G19090 164 / 4e-42 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 152 / 3e-38 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G20530 131 / 7e-32 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024039 [exp] 1244 / 0 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10026763 [exp] 297 / 2e-90 AT2G27090 713 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025550 [exp] 298 / 3e-90 AT2G27090 768 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10015534 [exp] 210 / 9e-59 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024007 [exp] 203 / 1e-55 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 202 / 5e-55 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10023949 [exp] 192 / 1e-52 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10020009 [exp] 187 / 1e-52 AT2G19090 381 / 1e-125 Protein of unknown function (DUF630 and DUF632) (.1) Lus10014445 [exp] 189 / 2e-50 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G090300 [exp] 809 / 0 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 808 / 0 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G197700 [exp] 304 / 2e-92 AT2G27090 804 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G159000 [exp] 304 / 3e-92 AT2G27090 746 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 225 / 1e-63 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 224 / 3e-63 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G108400 [exp] 220 / 9e-62 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G077000 [exp] 219 / 2e-61 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G142900 [exp] 213 / 1e-58 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 204 / 7e-56 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632) PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10041710 pacid=23146651 polypeptide=Lus10041710 locus=Lus10041710.g ID=Lus10041710.BGIv1.0 annot-version=v1.0 ATGGGTTCAACGAGCTCCAAGCCGAACAAAGTTGACGTCTTGCGGCTGTGCAAAGAGCGGAAGAGGTTCATAAAGCAAGCAATCGACTCCAGGTACAATC TCGCTGCAGCTCACCTTTCCTACATCGAATCCCTCAAGAACATCGGCGTATCCCTCCGCCGCTTCGCCGAGGCAGAGCTTTCCATAGAATCCTCTCTTTC AACCGCCGAGCTTGACAATGATAAGTCTCCATCACATTCTTCTTACCCTTCACCTTCCCCTTCTCACAACGCCTCTGACTCCCCCTTCCACAATGAAAGC CCAACCGCTCCGCCGGCGGTGAAAGTCAGCTACATGAAATCCGGCGGCGGTGCTGGTGCTACGGTGACGGTTAAGGTGAACTTGCAGGAAGAGAATAGGA TGAGGAGCAGTATTGATGGGTTTGATGAAGATGAGGAAATGTTGGGTTTCTCAGTGATGCCACCTCCTCCTCCACCTCCGCCGTTTAGTGGGTCTTGGGA CTACTTCGACACCAACAGTGATGATCAGTATGAGAGTTTCAGGTTCGTGGCGGCGCAGAATAATGAATTGGAATTGTTGGACTGGAATGGAAGGGTTGCT GGTGCTAGTTCTGGAGTGATAGATGCTAAGGGGAAATTTGTGGGAGTTGGTTCGGGGAATGAAGCACAATGTAAAGTTGTTGTTGAGAACTCCAGCCATG CAATGGAGCTGGAGCGGAAAGGTTTGAGTCCAGAAGGTAAAATCCAGTCAGGTTTGAAGAAGGAAAAACGAGTTGGATCCAATGATGGTGTAGCAGCAGA GAGAGAAGATCCATCAGAGTTCATTACTCATAGAGCTAAGGACTTTGTTTCCAGCATTAAAGAGATTGAGCATCGCTTCTTCAGGGCATCAGAGTCCGGA AAGGAGATTTCTAGAATGCTCGAGGCTAATAATATCAGGATTGCCTACTCTGAAGCGAAAGGGAGGTCTTCTGCGTCAGCAGTTTTGGAAGCTTTCAATC TTGTTTGCTGCCAAGGAAGGAGTTCACTTGTTTCCAATGAACCTGCAGAAAATGGAACAAAAGTCATAACTTGGAAGAGGACTACATCATCAAGATCATC TTCATCAAGAAATCCACTTAACAATGGGATAAAAGATGATGTCTCTGAAAGTGGTAGTGACTTTGTTGAGGAGTTCTGCATGATTTCAGGAAGTCATTCC TCCACTCTTGACAGACTCTACGCTTGGGAAAGAAAGTTGTATGATGAAGTTAGGGCTAGTGAATCTATCAGGAAGGAGTATGACCAGAAATGCGATAAGC TCAGACACCAATTTGCAAAGGATCATGGTGCTCAACTCATCGACAAGACTCGAGCAGCTGCCAAAGATCTACACTCACGGATAAGAGTCGCCATTCATTC CGTGGATTCAATATCGAAAAGAATCGAGAAAATGAGGGATGAAGAACTGCATCCACAACTTCTGGAGCTTGTTCAAGGGTTGATCCGAATGTGGAAGGCC ATGGTTGAATGCCACCATGCACAATACATCACCATATCCTTAGCATACCATTCAAGAACTACAGTACCAACCCCACGGGGAGACGCCCGGCGAGTGATGC TGTCACGGCTACTGCACGAGATCGAGTGCTTTGGATTAGGCTTTACAAACTGGGTAAACAGTCATACATCCTATGTCGAGGCTCTTAACGGGTGGCTGCA GCATTGCATCATACAACCACAAGAGCGTTCGAAGAACAGAAGACCTTTCTCTCCTCGCAGAGTTCTGGCTCCGCCCATCTTCGTCCTCTGTCGAGAGTGG TCAGCTGGGATCAAAGCCTTGCCATCTGAGGAACTTAATGATTCCATAAAGTCATTCTTGTCCGACGTGCGCCAGCTAATGCATCAACCAACAGAGCCAC TAGGAAAGGATAACAAAGATGCAGCCGATGGAGACACAGAGGCCAAAGATCAGAAGAAGATTACTGAGGATGCATCTACGAAACTGAGCTGTATCCACAC TAGTCTCACAAAGGTTCTAGACAGGTTAAACAAGTTCTCTGAAGCTTCACTGAAAATGTATGAGGATATCAGACAAAAAAGTGAAGCAGCTCGAGTTGCA TATTCAACTTGCAGGCCTGTTAGATTTTAA
AA sequence Show only first row Show all	>Lus10041710 pacid=23146651 polypeptide=Lus10041710 locus=Lus10041710.g ID=Lus10041710.BGIv1.0 annot-version=v1.0 MGSTSSKPNKVDVLRLCKERKRFIKQAIDSRYNLAAAHLSYIESLKNIGVSLRRFAEAELSIESSLSTAELDNDKSPSHSSYPSPSPSHNASDSPFHNES PTAPPAVKVSYMKSGGGAGATVTVKVNLQEENRMRSSIDGFDEDEEMLGFSVMPPPPPPPPFSGSWDYFDTNSDDQYESFRFVAAQNNELELLDWNGRVA GASSGVIDAKGKFVGVGSGNEAQCKVVVENSSHAMELERKGLSPEGKIQSGLKKEKRVGSNDGVAAEREDPSEFITHRAKDFVSSIKEIEHRFFRASESG KEISRMLEANNIRIAYSEAKGRSSASAVLEAFNLVCCQGRSSLVSNEPAENGTKVITWKRTTSSRSSSSRNPLNNGIKDDVSESGSDFVEEFCMISGSHS STLDRLYAWERKLYDEVRASESIRKEYDQKCDKLRHQFAKDHGAQLIDKTRAAAKDLHSRIRVAIHSVDSISKRIEKMRDEELHPQLLELVQGLIRMWKA MVECHHAQYITISLAYHSRTTVPTPRGDARRVMLSRLLHEIECFGLGFTNWVNSHTSYVEALNGWLQHCIIQPQERSKNRRPFSPRRVLAPPIFVLCREW SAGIKALPSEELNDSIKSFLSDVRQLMHQPTEPLGKDNKDAADGDTEAKDQKKITEDASTKLSCIHTSLTKVLDRLNKFSEASLKMYEDIRQKSEAARVA YSTCRPVRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39790			Protein of unknown function (D...		Lus10041710 [exp]	0	1
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10018518 [exp]	2.6	0.9632
AT2G05760			Xanthine/uracil permease famil...		Lus10030014 [exp]	2.8	0.9508
AT1G67040			unknown protein		Lus10033565 [exp]	4.6	0.9512
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	5.1	0.9517
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011730 [exp]	6.0	0.9399
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10035382 [exp]	6.3	0.9433
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10019042 [exp]	8.8	0.9388
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031108 [exp]	8.9	0.9504
AT5G51560			Leucine-rich repeat protein ki...		Lus10031123 [exp]	13.0	0.9314
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10032528 [exp]	13.4	0.9431

Compare expression of checked genes

Lus10041710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.