Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65110 1199 / 0 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT1G06310 339 / 6e-107 ACX6 acyl-CoA oxidase 6 (.1) AT1G06290 339 / 9e-107 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT2G35690 276 / 3e-83 ACX5 acyl-CoA oxidase 5 (.1) AT4G16760 275 / 1e-82 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT3G51840 82 / 2e-16 ATG6, ATSCX, ACX4 acyl-CoA oxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024038 [exp] 1317 / 0 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10016249 [exp] 351 / 2e-111 AT1G06290 965 / 0.0 acyl-CoA oxidase 3 (.1) Lus10039894 [exp] 342 / 1e-107 AT1G06290 1036 / 0.0 acyl-CoA oxidase 3 (.1) Lus10040183 [exp] 283 / 5e-85 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10007815 [exp] 280 / 8e-85 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004386 [exp] 280 / 1e-84 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004745 [exp] 278 / 6e-84 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10002177 [exp] 273 / 1e-83 AT1G06290 754 / 0.0 acyl-CoA oxidase 3 (.1) Lus10027811 [exp] 81 / 9e-16 AT3G51840 741 / 0.0 acyl-CoA oxidase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G090400 [exp] 1233 / 0 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.005G077600 [exp] 1212 / 0 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.013G123500 [exp] 337 / 5e-106 AT1G06290 1061 / 0.0 acyl-CoA oxidase 3 (.1) Potri.019G092600 [exp] 337 / 7e-106 AT1G06290 1070 / 0.0 acyl-CoA oxidase 3 (.1) Potri.003G079200 [exp] 276 / 3e-83 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.001G155500 [exp] 265 / 6e-79 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.016G118000 [exp] 76 / 2e-14 AT3G51840 750 / 0.0 acyl-CoA oxidase 4 (.1) Potri.006G101800 [exp] 75 / 5e-14 AT3G51840 751 / 0.0 acyl-CoA oxidase 4 (.1) Potri.009G011700 [exp] 58 / 1e-08 AT3G45300 694 / 0.0 isovaleryl-CoA-dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0087 [flax] [poplar] Acyl-CoA_dh PF01756 [flax] [poplar] ACOX Acyl-CoA oxidase CL0087 [flax] [poplar] PF02770 [flax] [poplar] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0087 [flax] [poplar] Acyl-CoA_dh PF00441 [flax] [poplar] Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041711 pacid=23146963 polypeptide=Lus10041711 locus=Lus10041711.g ID=Lus10041711.BGIv1.0 annot-version=v1.0 ATGGAACCTGAGAACCCCAAGATTCGGGCTTCCGATGAAGAAACTCAGGTCGTTTCCCGCCGCATCCGACGGCTATCCCTCCACCTGACCCCAATCCCGC GCCCGCTATCGGAGATTGACGGCGGCGAGGGACGGATAGGGATGGTGACGTGCGCGAGGGCGAAGAAGCTGGAGGTTGACACGGGGAAGCTGACGGATTA CATGAGAGGAAGGCACAAGGACGTGCAGGAGAAGGTTTTCGAGTATTTCGAGTCTAGGCCGGAACTTCAAACGCCGTTGGAGATCTCCAAAGACGATCAC AGGAAGCTCTGCTGGCGTCAGCTTGTGAGCTTGGTTAGGGAGGCTGGGATTAAGCCCTTTGGGTGTGTGGTTGATGATCCGGCCAAGTATTTCGCCATCG TTGAAGCTGTTGGTAGCGTGGATATGTCGCTTGGGATCTTGATGGGAGTTCAGTACAGTCTTTGGGGTGGTTCCGTACTCAACCTAGGAACTAAAAAGCA CAAGGATAAGTATTTTGATGGAATAGACAATTTGGACTATCCCGGTTGTTTTGCGATGACGGAGCTGCATCATGGCTCAAATGTACAGGCACTGCAGACG GCTGCAACATTTGACCCAATAACAGATGAATTTATAATCAACACCCCTAACGACGGAGCTATCAAATGGTGGATTGGTAATGCTGCAGTTAATGGAAAGT TTGCAACTGTTTTTGCCAGGCTGATGTTGCCTACTCATGACTCCAAGGGAGTTTCCGATATGGGTGTTCATGCATTCATTGTCCCGATAAGGCATTTTGA GACTCATGAAACACTTCCAGGTATTGAAATTCATGATTGCGGCCAAAAGGTTGGTCTGAACGGGGTAGATAACGGAGCACTGAGATTCAGTAAAGTAAGA ATTCCCCGTGACAACCTTCTTAATAGATTTGGTGACGTGTCTCGAGATGGCAAGTACACAAGTAGCCTTCCAACTGTAAATAAAAGATTTGCTGCAACAC TAGGGGAACTTGTAGGGGGAAGAGTTGGCCTTGCATATTCCTCTGTATCTGTTCTCAAGCTTGCTGGCACAATTGCTATTCGTTATTCTTTACTTAGGCA GCAGTTTGGCCCACCCAAACAGCCTGAAGTTAGTATCCTTGATTATCAGTCTCAGCAGCACAAGCTCATGCCCATGCTTGCGTCAACTTATGCTTTCCAT TTTGCTACCACGTATCTGGTAGAGATATACTCTGAGATGAAAAGAACTCATGACGAACAATTGGTTGGAGATGTTCATGCACTTTCTGCTGGCCTCAAAG CTTATGTAACATCCTATACGGCTAGGTCACTGAATGTCTGCAGGGAATCATGTGGAGGCCATGGGTATGCTGCTGTAAACCGGTTTGGTACTCTGAGAAA TGATCACGATATTTTCCAGACGTTCGAAGGAGACAACACAGTGCTTCTCCAGCAGGTCGCAGGGGATCTCTTAAAGCGATACCAGGAAAAGTTCCAAGGT GGAACCCTGACAGTTACGTGGAATTATTTAAGAGAGTCGATGAATTCATATTTGTCTCAGCCCAATCCAGTGACTGCACGATGGGAAGGGGAAGATCACT TGCGAGATCCCAAGTTCCAGTTGGATGCTTTCAGATATCGAACATCTCGATTGCTCCAAAGTGTTGCAGTCCGTCTTCGGGAGCACTCTAAGACCCTTGG AGGATTCGGTGCTTGGAACCGGTGCTTGAATCACCTTCTCATCCTGGCAGAATCTCATATCGAGACGGTCATCCTTGCAAAGTTTATTGAGGCAGTGCAG AAGTGCCGAGATCCTAGTGCACGATCTGCTCTGAAACTTGTATGTGATCTCTACGCCTTGGATCGAATCTGGAAGGACATTGGAACTTATCGCAATGTTG ACTATGTCGCACCAAACAAAGCTAAGGCAATCCACAAGCTGGCAGATTACTTGAGTTTCCAGGTTAGGAATATCGCCGGGGAATTGGTAGATGCATTTGA TCTTCCAGATAATGTCACCAGGGCACCAATTGCGATGCAGTCAGAAGCTTACTCGCAGTATACCAATTACGTTGGATTCTAA
AA sequence Show only first row Show all	>Lus10041711 pacid=23146963 polypeptide=Lus10041711 locus=Lus10041711.g ID=Lus10041711.BGIv1.0 annot-version=v1.0 MEPENPKIRASDEETQVVSRRIRRLSLHLTPIPRPLSEIDGGEGRIGMVTCARAKKLEVDTGKLTDYMRGRHKDVQEKVFEYFESRPELQTPLEISKDDH RKLCWRQLVSLVREAGIKPFGCVVDDPAKYFAIVEAVGSVDMSLGILMGVQYSLWGGSVLNLGTKKHKDKYFDGIDNLDYPGCFAMTELHHGSNVQALQT AATFDPITDEFIINTPNDGAIKWWIGNAAVNGKFATVFARLMLPTHDSKGVSDMGVHAFIVPIRHFETHETLPGIEIHDCGQKVGLNGVDNGALRFSKVR IPRDNLLNRFGDVSRDGKYTSSLPTVNKRFAATLGELVGGRVGLAYSSVSVLKLAGTIAIRYSLLRQQFGPPKQPEVSILDYQSQQHKLMPMLASTYAFH FATTYLVEIYSEMKRTHDEQLVGDVHALSAGLKAYVTSYTARSLNVCRESCGGHGYAAVNRFGTLRNDHDIFQTFEGDNTVLLQQVAGDLLKRYQEKFQG GTLTVTWNYLRESMNSYLSQPNPVTARWEGEDHLRDPKFQLDAFRYRTSRLLQSVAVRLREHSKTLGGFGAWNRCLNHLLILAESHIETVILAKFIEAVQ KCRDPSARSALKLVCDLYALDRIWKDIGTYRNVDYVAPNKAKAIHKLADYLSFQVRNIAGELVDAFDLPDNVTRAPIAMQSEAYSQYTNYVGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10041711 [exp]	0	1
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10024038 [exp]	1.0	0.9824
AT3G17510		CIPK1, SnRK3.16	SNF1-RELATED PROTEIN KINASE 3....		Lus10018334 [exp]	2.4	0.9532
AT3G14260			Protein of unknown function (D...		Lus10001484 [exp]	3.2	0.9669
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	3.5	0.9648
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017934 [exp]	9.5	0.9492
AT3G01430			unknown protein		Lus10014527 [exp]	12.6	0.9547
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	15.6	0.9596
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Lus10028173 [exp]	15.9	0.9345
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	15.9	0.9532
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035290 [exp]	16.2	0.8768

Compare expression of checked genes

Lus10041711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.