Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18570 415 / 2e-141 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 410 / 2e-139 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT5G26310 393 / 9e-133 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT5G66690 389 / 7e-131 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT4G01070 348 / 4e-115 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT2G18560 343 / 2e-114 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 338 / 1e-111 UDP-Glycosyltransferase superfamily protein (.1) AT1G01420 336 / 1e-110 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 320 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 226 / 2e-68 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024037 [exp] 915 / 0 AT2G18570 412 / 3e-140 UDP-Glycosyltransferase superfamily protein (.1) Lus10024035 [exp] 443 / 3e-152 AT3G50740 486 / 3e-169 UDP-glucosyl transferase 72E1 (.1) Lus10041715 [exp] 440 / 7e-151 AT3G50740 478 / 6e-166 UDP-glucosyl transferase 72E1 (.1) Lus10005950 [exp] 376 / 8e-126 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 374 / 4e-125 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 361 / 3e-120 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 351 / 3e-116 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003944 [exp] 347 / 9e-115 AT4G01070 400 / 1e-135 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 313 / 1e-101 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G030400 [exp] 513 / 8e-180 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G030500 [exp] 506 / 7e-177 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G030300 [exp] 461 / 2e-159 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G029800 [exp] 452 / 5e-156 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1) Potri.014G041800 [exp] 371 / 4e-124 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G138200 [exp] 354 / 3e-117 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096100 [exp] 338 / 2e-111 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 335 / 4e-110 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 321 / 8e-105 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041900 [exp] 291 / 1e-93 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10041713 pacid=23146669 polypeptide=Lus10041713 locus=Lus10041713.g ID=Lus10041713.BGIv1.0 annot-version=v1.0 ATGGAAACATCAACCGTCGACGTCGACCACCACCCACAACCTCCCCACATCGTCCTCCTGGCCAGCCCTGGCACCGGCCACCTCATCCCTGTCCTTGAGC TCGGCATACGCCTCGTCACACACCACAACTCCACCGTCACCGTCTTCGTAGTAGCCGTCGATCACTCCTCCCCGGCCGAGGCCGCCTTAATCCTCGACGC CACCGCCAGGGCTCATTATTCTTCGAAAAATATCCTATTCAACGTGGTCAAACTCCCGGCGCCGGACATCTCCAACCTCGTCGACCAGGAAGCGGCCGTC GTGACCCGCATCTGCGTGCTCATGAGGGAGACCAAGCCCACCTTACGCTCCGCCATGAGGTCGCTGGAGGTCCTGCCGGCAGCTCTGGTTGTTGATCTTT TCGGGACGGAGTCGTTCGTGATAGCCGACGAGATGGGGATAGGGAAGTACTTGTTGGGGACGTCGAATGCGTGGTTCACCGCTCTCACCCTTCACACGCC GGCTTTGGATAAGGAAGTGGATGGTCAGTACGTTGACCAGACTGAACCGTTGACCATTCCGGGTTGTCGTTTGGTCCGACCTGATGAAGTGGTTGATCCC ATGTTGGACCGGAACGATATGCAGTACGTCGAGTACAAACGCATCGGAGCTGAGTTCGCCAAAGCTGACGCTATACTAATAAACACTTGGGAGGATCTGG AACCATCTACTCTCGCTGCACTTCGAAACGACAAGTTCTTCGGTGGTAGCGTCATCAAGGGAGACGTTCTATCAATCGGTCCACTCGTCCGACCCAGCAA TAATAACCAAAAGGGTCCAACCGATGATGATGAGTTATTCTCTTGGTTAGACAAGCAACCCAAACAGTCTGTTATCTACGTGTCGTTCGGCAGCGCTGGG ACCCTATCAACCCACCAGCTAAATGAGCTGGCTCATGGGCTCGAACTTAGCAAGCAGAGGTTCGTTTGGGTGGTACGCCGGCCCACTGATTTCAAAGACT CGGCCTACTTCACTTTCGGTGGGTCCGACGAGATACCCGGACGACTTAACTATCTGCCGGACGGATTCTTGGAAAGAACCCGAGATGTGGGCATGGTGGT CCCGAATTGGGCCCCTCAGGCCGAAGTTCTGTGCCATCCTTCGGTTGGGTGGTTTCTTAGTCATTGCGGGTGGAACTCGACGCTGGAGAGCGTGACGAAC AATGTGCCGATGGTGGTGTGGCCGATGTACGCGGAGCAGAGGATGAACTCGACGCTGTTGGCGGAGGAATTGAAGGTTGCGGCGAGGACCAAAACGATGC CGTGGAGGGGAGTTGTTGGGAGAGAAGAGATAGGGGAGTTGGTTAAGAAGGTGATGGTTGGTGAAGAAGGGGTTTTAATTAGGGAGAAGGTGAATGAGGT TAAATGCAGTGGGGAGAAGGCATTGAAAGAAGGAAGTGGTTCTTCTTTTAAAGCGTTGGCTAGTGTGGTTGATAAGTGTGCTTGTCGTTATGCCACCAAA TTTTAA
AA sequence Show only first row Show all	>Lus10041713 pacid=23146669 polypeptide=Lus10041713 locus=Lus10041713.g ID=Lus10041713.BGIv1.0 annot-version=v1.0 METSTVDVDHHPQPPHIVLLASPGTGHLIPVLELGIRLVTHHNSTVTVFVVAVDHSSPAEAALILDATARAHYSSKNILFNVVKLPAPDISNLVDQEAAV VTRICVLMRETKPTLRSAMRSLEVLPAALVVDLFGTESFVIADEMGIGKYLLGTSNAWFTALTLHTPALDKEVDGQYVDQTEPLTIPGCRLVRPDEVVDP MLDRNDMQYVEYKRIGAEFAKADAILINTWEDLEPSTLAALRNDKFFGGSVIKGDVLSIGPLVRPSNNNQKGPTDDDELFSWLDKQPKQSVIYVSFGSAG TLSTHQLNELAHGLELSKQRFVWVVRRPTDFKDSAYFTFGGSDEIPGRLNYLPDGFLERTRDVGMVVPNWAPQAEVLCHPSVGWFLSHCGWNSTLESVTN NVPMVVWPMYAEQRMNSTLLAEELKVAARTKTMPWRGVVGREEIGELVKKVMVGEEGVLIREKVNEVKCSGEKALKEGSGSSFKALASVVDKCACRYATK F

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18570			UDP-Glycosyltransferase superf...		Lus10041713 [exp]	0	1
AT4G12410			SAUR-like auxin-responsive pro...		Lus10024600 [exp]	1.0	0.9390
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004177 [exp]	2.2	0.9110
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10003226 [exp]	2.8	0.9209
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10040139 [exp]	3.0	0.9248
AT5G53110			RING/U-box superfamily protein...		Lus10023086 [exp]	7.5	0.9264
AT5G15240			Transmembrane amino acid trans...		Lus10030683 [exp]	9.5	0.8694
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10018306 [exp]	13.9	0.9062
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	13.9	0.8636
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10003858 [exp]	17.3	0.8823
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020480 [exp]	19.6	0.9055

Compare expression of checked genes

Lus10041713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.