Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41020 335 / 4e-108 MYB myb family transcription factor (.1) AT4G32730 56 / 4e-08 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT5G58850 45 / 9e-05 MYB ATMYB119 myb domain protein 119 (.1) AT5G11050 42 / 0.0008 MYB ATMYB64 myb domain protein 64 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024036 [exp] 870 / 0 AT5G41020 336 / 3e-108 myb family transcription factor (.1) Lus10022926 [exp] 545 / 0 AT5G41020 359 / 1e-117 myb family transcription factor (.1) Lus10022932 [exp] 152 / 7e-43 AT5G41020 112 / 7e-29 myb family transcription factor (.1) Lus10038623 [exp] 46 / 0.0001 AT4G32730 376 / 3e-118 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G095000 [exp] 425 / 7e-141 AT5G41020 410 / 1e-134 myb family transcription factor (.1) Potri.003G168900 [exp] 412 / 3e-136 AT5G41020 398 / 1e-130 myb family transcription factor (.1) Potri.006G241700 [exp] 58 / 1e-08 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.018G038000 [exp] 58 / 2e-08 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041714 pacid=23146929 polypeptide=Lus10041714 locus=Lus10041714.g ID=Lus10041714.BGIv1.0 annot-version=v1.0 ATGGTGAATGGGGAGGTTGGATCGACAGAGTTTGTACGTGGAATGGAAGAAAGGAACAGTAGAAAGAAAAGGAAGAGAATCAAGGGCAACGATTTGGTTG ATTCTAGTTCTGGAATGGACCTAAGCAAGGTCGAGCATGGAGTCGGTTCCTCGAACAGAATTGAAGCTGGAAACTTCAACTCTCCAAATGAGAGAAGTAA GAAGAAAAAGAGAAAGAAGCATGGGAATGATCAGATGATAATGAATGAGGAATTAGGGGATGCAGGTGCTGTAGTAAGAGAAGACAAAGAGAATGGGGGA AAGGGTAGATCAGGAATTGTAAATCTGAACTGCAAAGCTTCTAATGACAAGGAGGAGGCGAAAGAGAAGAAGAAGAGGAAGAAGAATAAGAAGAAGAAGG TAAAGCACAACATTGATACAGAAGCTATATTGAAGGAGGCCCGAGTTGGAAATAATGAAGCAGATGGAAAAGACATTAGGTATAATGGGGATTCCCATGG TGAACCTGCTGTTGGAAACTCTGAGAAAGAGGAGGACAAGAAGAAGAAGAAGGATAAGGATAAGGATAAGAAGACAACGCAACTAGTTTTGGAGGAGCCT ATATTGCAGGAGTGCTCCGTGGGAGATGATGAAGCTGCCACAAAAGAACTTGAAAACACAGAGTATTCAAAAGACAGAACGAAGGATAAGAAGAAGCAAA CTATTGATGTAGGAAAGAGAGTTGAAATAAATACGGATGCACCCGAAATCTCTCCGCTTAAATCAACATCGAAGAGAGTGAGTTTTGACGAAGATCTGGA GGTGCTCACCAGTTCTAATGATCTGGTGAGAGGGAAGCGCTTCACACCTGAGGAGGACAAGTTGGTTCAAGCTGCTTGCTGGGAGTATGTTTATTCCAAG GATTTAGGTGATGAAGGTATCCAAATGATTCTCAACTGTAGGACGCATAAACGTGACAACAACTGCTGGAAGGAAATATGCGCCGCGATACCTTGGCGCC CACGTGAAAGCGTACGGTATCGCGCTCATATCTTATTCGAAAGGGGCGAGAGCCGCAAATGGACAGAAGAAGAGCGCGAGATAGTGATGAAGCATTATAA AAAACATGGTGCAAATTGGAAACCTCTGGCCGAGGCCTTTGGGAAGACGAGGTTACATGTAAAGAACACGCACCGAAGGTTTAAATTTGAGAATTTAAAG AAGGGACGGTGGACTCAAGACGAGGTTGAGCAAGTTTATGATCTGGTGAACACAAATCTGAAAATGAAGGCGTTTGAGGAAAGGAAATCGAAGCATGGAA TGTTCAAGGACAACATTTGTTGGGGTGCGATCAGTGAGAAGCTGAAAACAAGGAATCATTCACATTGCTCGCAGAAATGGTATAGGCAGCTGGCTTCGCC GATGGTTCAGCAGAAGAAATGGTTTGACATGGACGATTACTACCTTGTGATCGAGCTTTACAACTTGGATGCTTGCTGTATGGAAGACGTGGACTGGGAT TGCCTTTTGGAGCATAGGTCCGGAGACGTGTGCCGAAAGAGGTGGAATGAAATGGTGAAACACCTTGGCGATTGCAGTAACAAGTCGTTTAGCGAACAAG TAGAGATTCTGGCGAAGAGATACACCCCCGATGTGCTTGAAGCTAGAGAGGCTTACTATACCAAACCTGTTGTCGATTGA
AA sequence Show only first row Show all	>Lus10041714 pacid=23146929 polypeptide=Lus10041714 locus=Lus10041714.g ID=Lus10041714.BGIv1.0 annot-version=v1.0 MVNGEVGSTEFVRGMEERNSRKKRKRIKGNDLVDSSSGMDLSKVEHGVGSSNRIEAGNFNSPNERSKKKKRKKHGNDQMIMNEELGDAGAVVREDKENGG KGRSGIVNLNCKASNDKEEAKEKKKRKKNKKKKVKHNIDTEAILKEARVGNNEADGKDIRYNGDSHGEPAVGNSEKEEDKKKKKDKDKDKKTTQLVLEEP ILQECSVGDDEAATKELENTEYSKDRTKDKKKQTIDVGKRVEINTDAPEISPLKSTSKRVSFDEDLEVLTSSNDLVRGKRFTPEEDKLVQAACWEYVYSK DLGDEGIQMILNCRTHKRDNNCWKEICAAIPWRPRESVRYRAHILFERGESRKWTEEEREIVMKHYKKHGANWKPLAEAFGKTRLHVKNTHRRFKFENLK KGRWTQDEVEQVYDLVNTNLKMKAFEERKSKHGMFKDNICWGAISEKLKTRNHSHCSQKWYRQLASPMVQQKKWFDMDDYYLVIELYNLDACCMEDVDWD CLLEHRSGDVCRKRWNEMVKHLGDCSNKSFSEQVEILAKRYTPDVLEAREAYYTKPVVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41020	MYB		myb family transcription facto...		Lus10041714 [exp]	0	1
AT4G25390			Protein kinase superfamily pro...		Lus10027393 [exp]	1.0	0.9053
AT5G43490			unknown protein		Lus10002352 [exp]	1.4	0.8984
AT5G43490			unknown protein		Lus10003153 [exp]	4.0	0.8680
AT3G05670			RING/U-box protein (.1)		Lus10015213 [exp]	5.5	0.8707
AT5G67320		HOS15	high expression of osmotically...		Lus10024972 [exp]	7.3	0.8383
AT1G31830			Amino acid permease family pro...		Lus10012153 [exp]	8.2	0.8814
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10010326 [exp]	8.9	0.8763
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10034688 [exp]	10.8	0.8630
AT5G53800			unknown protein		Lus10014800 [exp]	11.0	0.8873
AT1G61040		VIP5	vernalization independence 5, ...		Lus10011205 [exp]	16.6	0.8283

Compare expression of checked genes

Lus10041714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.