Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50740 466 / 4e-161 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT5G66690 457 / 4e-158 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT5G26310 448 / 1e-154 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 375 / 3e-126 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 368 / 4e-123 UDP-Glycosyltransferase superfamily protein (.1) AT4G01070 340 / 5e-112 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 311 / 6e-101 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 309 / 5e-100 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 294 / 1e-95 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 241 / 3e-74 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024035 [exp] 922 / 0 AT3G50740 486 / 3e-169 UDP-glucosyl transferase 72E1 (.1) Lus10024037 [exp] 436 / 3e-149 AT2G18570 412 / 3e-140 UDP-Glycosyltransferase superfamily protein (.1) Lus10041713 [exp] 427 / 1e-145 AT2G18570 415 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1) Lus10005950 [exp] 367 / 2e-122 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 363 / 7e-121 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003944 [exp] 327 / 4e-107 AT4G01070 400 / 1e-135 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 325 / 3e-106 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 313 / 1e-101 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 306 / 3e-99 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G030400 [exp] 552 / 0 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G030300 [exp] 478 / 3e-166 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G029800 [exp] 466 / 3e-161 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1) Potri.007G030500 [exp] 437 / 5e-150 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G096100 [exp] 352 / 6e-117 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G138200 [exp] 344 / 2e-113 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041800 [exp] 343 / 4e-113 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 332 / 5e-109 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 312 / 1e-101 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041900 [exp] 289 / 6e-93 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10041715 pacid=23147006 polypeptide=Lus10041715 locus=Lus10041715.g ID=Lus10041715.BGIv1.0 annot-version=v1.0 ATGCAATCCGCCGGCGCCGGAAGACCCCACGTTGCACTGCTCGCCAGCCCCGGGATGGGCCACCTCATCCCGGTCCTCGAGCTTGGCAAGCACCTCATCG CCAACCACGACATCTCCATCACCATCTTCGTCGTCTCCACCGACGCCGCCACTTCCAAATCTCTCCTCAAAACCTGCCCCAACACCGCCAACCTCTCCAT CGTCCCGCTCCCGCCGGTTGACATTTCCGCCCACGTCGAACCCTCCGACCACTTCGTCACCAAGCTCATCGTCATGATGCAACAGTCCGTCTCCAACCTC CGTTCCGCAATCTCGCTCATGCGGACCCCACCTTCCGCACTCGTAGTCGACATCTTTGGCACCGAATCCTTCTCCGTTGCCGACGAGTTCGGAATGCTCA AGTATGCTTTCATCACCACCACCGCCTCCTTCCTCGCCGTCACTGTCTACGGCGGAGTAACCGAGCACGAAGTCGTCGAGCACGTTACGTTGAAAAAACC GCTCCACGTACCCGGTTGCAAACCGATCCGGTTCGAGGACACGCTCCACGCGTACCTCGATTATGGAGACCGGGTTTTCGACGACGCCCAAAAGCTCGGG GCCGGGTTCGCTTTGGCGGACGGGATCTTAATCAACACGTGGGAAAGTCTGGAGGTTCAAACCCTCGCTGCTCTAAGGAGCGAGAAGCATTTAAAGAACA TAGTCAAAGCTCCGGTCTATCCAGTAGGACCGCTGGTCCGACCTTCTCCACCGACCGGTTCGACCGAAAACAACACGGTTCTGGAATGGCTGGACGAGCA GCCCAGCGAGTCGGTCATCTACGTGTCCTTCGGAAGCGGTGGGACGCTCTCCCGGGCCCAAATGGCCGAGCTGGCATGGGGACTCGAGCTGAGCGGGCAT CGATTCATTTGGGTAGTCCGCCCACCGGTTGACGACGACGCTTCCGCCGCATTTTTCTCCTTGGGGAAAGCGTCTGAATCAGATGGGGCCCAGAGGTATT TGCCAGGTGGATTCATTGCCAGGACAAAGGACAGAGGAATGGTGGTCCCCATGTGGGCCCCACAGACCGAGATTCTCGCCCACGAATCCGTGGGCGCGTT CGTATCTCACTGCGGGTGGAACTCGACTCTAGAGAGCATCACGAACGGGGTTCCGATGGTGGTGTGGCCGCTGTACGCGGAACAGAATCTGAACGCGGTG CTGCTAACGGAGGAGCTCCGGGTGGCGGTGCGGCCGGCGGTGAACGAAGACGTCGGCGGCGTGGTGAAGAGAGGGGAGATAGAGAATTTGGTGAGGAAAG TGATGGAAGGGGAAGAGGGAAAGGGTATAAGGGAGAGGGTTAAGGAAGTTATGGAAGACGGCGGTAGTGCTCTGAGCCGGAAACTAAACGGCTCGTCGTT TAGGGCGTTGGAAAAAGTTGCTGGAGAATGTGAGTGGAACCACCGGAGGGTCAAGGCCAAAGCTCAAGGTGCTTAA
AA sequence Show only first row Show all	>Lus10041715 pacid=23147006 polypeptide=Lus10041715 locus=Lus10041715.g ID=Lus10041715.BGIv1.0 annot-version=v1.0 MQSAGAGRPHVALLASPGMGHLIPVLELGKHLIANHDISITIFVVSTDAATSKSLLKTCPNTANLSIVPLPPVDISAHVEPSDHFVTKLIVMMQQSVSNL RSAISLMRTPPSALVVDIFGTESFSVADEFGMLKYAFITTTASFLAVTVYGGVTEHEVVEHVTLKKPLHVPGCKPIRFEDTLHAYLDYGDRVFDDAQKLG AGFALADGILINTWESLEVQTLAALRSEKHLKNIVKAPVYPVGPLVRPSPPTGSTENNTVLEWLDEQPSESVIYVSFGSGGTLSRAQMAELAWGLELSGH RFIWVVRPPVDDDASAAFFSLGKASESDGAQRYLPGGFIARTKDRGMVVPMWAPQTEILAHESVGAFVSHCGWNSTLESITNGVPMVVWPLYAEQNLNAV LLTEELRVAVRPAVNEDVGGVVKRGEIENLVRKVMEGEEGKGIRERVKEVMEDGGSALSRKLNGSSFRALEKVAGECEWNHRRVKAKAQGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Lus10041715 [exp]	0	1
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10018392 [exp]	2.4	0.8876
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10011259 [exp]	5.1	0.7830
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029707 [exp]	6.2	0.8258
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022215 [exp]	7.3	0.8095
AT2G35736			unknown protein		Lus10000732 [exp]	7.3	0.7763
AT2G25790			Leucine-rich receptor-like pro...		Lus10006045 [exp]	7.9	0.8004
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042744 [exp]	9.5	0.8108
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	11.9	0.8189
AT1G47670			Transmembrane amino acid trans...		Lus10003339 [exp]	14.2	0.8048
AT4G24780			Pectin lyase-like superfamily ...		Lus10013666 [exp]	17.0	0.8168

Compare expression of checked genes

Lus10041715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.