Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36760 947 / 0 ATAPP1 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) AT3G05350 515 / 5e-175 Metallopeptidase M24 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024034 [exp] 1166 / 0 AT4G36760 924 / 0.0 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Lus10029923 [exp] 529 / 2e-180 AT3G05350 978 / 0.0 Metallopeptidase M24 family protein (.1) Lus10004479 [exp] 501 / 2e-171 AT3G05350 910 / 0.0 Metallopeptidase M24 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029700 [exp] 1013 / 0 AT4G36760 1015 / 0.0 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.013G021400 [exp] 521 / 2e-177 AT3G05350 1025 / 0.0 Metallopeptidase M24 family protein (.1) Potri.007G030050 [exp] 402 / 9e-138 AT4G36760 397 / 4e-136 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.018G145576 [exp] 165 / 1e-48 AT4G36760 166 / 1e-49 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.T045100 [exp] 165 / 1e-48 AT4G36760 166 / 1e-49 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.018G145584 [exp] 90 / 6e-22 AT4G36760 85 / 2e-21 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0356 [flax] [poplar] AMP_N-like PF01321 [flax] [poplar] Creatinase_N Creatinase/Prolidase N-terminal domain CL0356 [flax] [poplar] PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Lus10041716 pacid=23146901 polypeptide=Lus10041716 locus=Lus10041716.g ID=Lus10041716.BGIv1.0 annot-version=v1.0 ATGGCGGATATCCTCTCGTCTCTACGATCTCTAATGGCTGCACACTCTCCTCCTCTCGATGCCTTGGTCGTACCATCTGAAGATTATCATCAGAGCGAGT ATGTCTCTGGACGTGACAAGAGGCGTGAATTCGTTTCTGGCTTCACCGGAAGCGCTGGGTTGGCTCTTATCACTAAGGATCAGGCAAGGTTGTGGACAGA TGGACGCTACTATCTGCAGGCCGAGAAACAACTTAGTCATGAATGGGCTCTCATGCGTTTGCTTGAGGATCCTACCGTGGATGCCTGGATGGCTGATAAT CTTCAAGAGGAAGCTTGTATTGGAGTTAATCCATGGTGTATATCAGCAGACACAGCCCGTAGATGGGAGCATGCTTTTGCAAAGAAACAACAGAAGCTAG TTCAAACTGCTACTGATTTGGTGGATGAGGTCTGGAAAAGTCGTCCAGCAGATGAAGCCAATCCTGTTACAGTCCAGCCACAAGAGTTTACTGGTCGTGC CCCCCAGCCACAAGAGTTTACTGGTCGTTCAGTTGCGGAGAAGCTAAGTGACTTGAGGGAAAAGTTGAAAACTTCAAAGGCTCGTGGTATTATTATTACC ACCCTAGATGAGGTTGCTTGGTTATATAATATTCGAGGAAGTGACGTGCCCTACTGTCCGGTTGTGCATGCATTTGCTATTGTGACACTTAACTCTGCTT TCCTTTATGTAGACAAAAAGAAGGTGTCTTCTGAGGTAAATTCCTACATGACAGATAATGCAATTGAAGTCCGGGATTACGCTGCAGTGAGCTCAGATGT GCTACTGCTTGCAGCTGATAAGCTTGATTCCTCGAGTACCATCAAAGGAAAGCCTGATACTGTTGGAAATGGTACAACTACAGCAGAAGGGCATGAAATT GACCTTGTATGGGTTGACTCTGCGTCATGCTCCTTTGCTTTGTATTCAAAATTGAATCCTGAGAAGGTGTTCCAACGGCAGTCACCATTGGCCCTTCCAA AAGCTCTGAAGAACCCAGTGGAGTTGGATGGTTTGAGAAATGCACACATAAGGGATGGTGCTGCTGTTGTACAATATCTTGTTTGGTTGGATAAACAGAT GCAAGATATGTATGGGGCTTCTGGTTACTTCGTGGAAGGGGAGACTGACAAGAAGAAAAAAGATCTGAGAACTACAAAACTGACTGAGGTGACAGTTAGC GACAAGCTGGAGAGTTTCCGGGCATCAAAAGAGCATTTCAGAGGTTTGAGTTTCCCTACCATATCATCAGTTGGTCCAAATGCTGCAATCATCCATTATG GTCCTCAGCCTGAAACATGTGCCGAACTTGATCCAGATAGGATCTACCTGTTTGATTCCGGAGCACAGTATCTGGACGGCACAACTGACATAACTCGGAC AGTACATTTCGGCATCCCATCAGCACATGAGAAAGCTTGCTATACAGCTGTCCTCAAGGGTCACATTGGATTGGGTAATGCTCGATTTCCTAATGGAACC AATGGTAACGCCCTTGACATTCTTGCTCGAATTCCTTTGTGGAAGAGCGGTCTTGATTATCGTCACGGTACTGGCCACGGTATTGGGTCATTTCTATTCG TTCATGAAGGACCTCATTTGATCAGCTTTAGGCCATCAGCTCGGAATGTTCCAATCCAAGCTTCCATGACAGTAACAGATGAGCCTGGATACTACGAGGA TGGCAACTTCGGCATAAGGCTAGAGAATGTGCTTGTAGTCAACGAAGCTTACACCAAATTCAACTTTGGTGGCAAAGGCTACTTGGAATTCGAGCACATA ACATGGGCACCGTATCAGAAAAAGCTGATAGATGTCAGCATGCTAGTCCCGGAAGAGGTGGAATGGCTGAACACATACCATTCGAGGTGCAGAGAGATTC TCGCACCGTATTTGAACGACACTGAGAAGTCATGGCTGAAGAATGCCACTGAGCCGGTTACGGTGGCTTAA
AA sequence Show only first row Show all	>Lus10041716 pacid=23146901 polypeptide=Lus10041716 locus=Lus10041716.g ID=Lus10041716.BGIv1.0 annot-version=v1.0 MADILSSLRSLMAAHSPPLDALVVPSEDYHQSEYVSGRDKRREFVSGFTGSAGLALITKDQARLWTDGRYYLQAEKQLSHEWALMRLLEDPTVDAWMADN LQEEACIGVNPWCISADTARRWEHAFAKKQQKLVQTATDLVDEVWKSRPADEANPVTVQPQEFTGRAPQPQEFTGRSVAEKLSDLREKLKTSKARGIIIT TLDEVAWLYNIRGSDVPYCPVVHAFAIVTLNSAFLYVDKKKVSSEVNSYMTDNAIEVRDYAAVSSDVLLLAADKLDSSSTIKGKPDTVGNGTTTAEGHEI DLVWVDSASCSFALYSKLNPEKVFQRQSPLALPKALKNPVELDGLRNAHIRDGAAVVQYLVWLDKQMQDMYGASGYFVEGETDKKKKDLRTTKLTEVTVS DKLESFRASKEHFRGLSFPTISSVGPNAAIIHYGPQPETCAELDPDRIYLFDSGAQYLDGTTDITRTVHFGIPSAHEKACYTAVLKGHIGLGNARFPNGT NGNALDILARIPLWKSGLDYRHGTGHGIGSFLFVHEGPHLISFRPSARNVPIQASMTVTDEPGYYEDGNFGIRLENVLVVNEAYTKFNFGGKGYLEFEHI TWAPYQKKLIDVSMLVPEEVEWLNTYHSRCREILAPYLNDTEKSWLKNATEPVTVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10041716 [exp]	0	1
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	4.2	0.8393
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10016580 [exp]	4.9	0.7989
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10038176 [exp]	5.7	0.7831
AT5G55060			unknown protein		Lus10000118 [exp]	6.3	0.7759
AT5G05930		ATGC1	ARABIDOPSIS GUANYLYL CYCLASE 1...		Lus10009875 [exp]	7.0	0.7607
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Lus10029976 [exp]	8.7	0.7442
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10031626 [exp]	11.0	0.7590
AT5G09890			Protein kinase family protein ...		Lus10005707 [exp]	17.2	0.7575
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10027196 [exp]	20.0	0.7634
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10037469 [exp]	21.8	0.7435

Compare expression of checked genes

Lus10041716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.