Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14910 382 / 9e-135 HISN5B, IGPD HISTIDINE BIOSYNTHESIS 5B (.1.2.3) AT3G22425 375 / 3e-132 HISN5A, IGPD imidazoleglycerol-phosphate dehydratase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024033 [exp] 503 / 0 AT4G14910 387 / 1e-136 HISTIDINE BIOSYNTHESIS 5B (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G087600 [exp] 390 / 4e-138 AT4G14910 381 / 2e-134 HISTIDINE BIOSYNTHESIS 5B (.1.2.3) Potri.008G152701 [exp] 315 / 2e-108 AT3G22425 316 / 6e-109 imidazoleglycerol-phosphate dehydratase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00475 [flax] [poplar] IGPD Imidazoleglycerol-phosphate dehydratase
Representative CDS sequence Show only first row Show all	>Lus10041717 pacid=23147082 polypeptide=Lus10041717 locus=Lus10041717.g ID=Lus10041717.BGIv1.0 annot-version=v1.0 ATGGAGCTGACTCTCCGATCTGCCATTCCCACCGCTTCCTCCTCCACGCACCGGCGACTCAGAACACTTCCTCAAAGAAACCATTTTCCATCTTCGCGAA TTAACTCTTCAATCTTTTCTTCGAGCCGCTCAAGAATAAACCTGCAGTTAGTATCAACAAAACCCCCATCCTCACGCGCCACCGCTCAAATGGGAGACAA CGGCTCATCATCTTCCACTGCCACAGCTTCACAGTTGGAATCAGTTGGAGCTCGATGCGGAGAGGTGAAGAGGGTCACTAAGGAGACCAACGTGTTCGTC AGAATAAACTTGGACGGTACTGGAGTTTCTGATTCCTCCTCCGGGATTCCATTTCTCGATCACATGTTAGATCAACTTGCATCACACGGGCTATTTGATG TTCATGTGAGGGCAACTGGTGACGTTCATATTGATGACCATCACACCAATGAAGATGTTGCTCTTGCTATTGGCACGGCTTTGCTACAGGCTCTTGGTGA TAGGAAAGGCATTCACAGGTTTGGGGATTTTTCAGCTCCTCTAGACGAAGCATTGATTCACGTCGCATTGGATCTATCCGGAAGACCACATTTAAATTAT GATTTACAGATTCCCACTCAGAGAGTTGGAACCTATGACACTCAGTTGGTTGAGCATTTTTTCCAATCATTGGTGAACACTTCCGGTATGACACTTCACA TACGACAGCTTGCTGGGAAGAATTCTCACCATATTATTGAGGCAACCTTCAAAGCTTTTGCCAGGGCGCTTCGACAAGCAACAGAAGCTGATCCACGGCG CCTTGGGACTGTGCCGAGCTCAAAGGGTGTTCTGTCACGTTCTTGA
AA sequence Show only first row Show all	>Lus10041717 pacid=23147082 polypeptide=Lus10041717 locus=Lus10041717.g ID=Lus10041717.BGIv1.0 annot-version=v1.0 MELTLRSAIPTASSSTHRRLRTLPQRNHFPSSRINSSIFSSSRSRINLQLVSTKPPSSRATAQMGDNGSSSSTATASQLESVGARCGEVKRVTKETNVFV RINLDGTGVSDSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDVALAIGTALLQALGDRKGIHRFGDFSAPLDEALIHVALDLSGRPHLNY DLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEADPRRLGTVPSSKGVLSRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Lus10041717 [exp]	0	1
AT4G24175			unknown protein		Lus10017264 [exp]	16.6	0.8266
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016405 [exp]	17.9	0.8014
AT5G27110			Tetratricopeptide repeat (TPR)...		Lus10009702 [exp]	19.4	0.7679
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Lus10038323 [exp]	24.0	0.7587
AT5G02050			Mitochondrial glycoprotein fam...		Lus10012653 [exp]	28.9	0.7111
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10029196 [exp]	30.1	0.8016
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10004053 [exp]	32.5	0.7969
AT5G01590			unknown protein		Lus10022672 [exp]	33.5	0.7963
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10028945 [exp]	37.2	0.7337
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	39.7	0.7748

Compare expression of checked genes

Lus10041717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.