Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36750 333 / 7e-116 Quinone reductase family protein (.1) AT4G27270 258 / 3e-87 Quinone reductase family protein (.1) AT5G54500 253 / 2e-85 FQR1 flavodoxin-like quinone reductase 1 (.1.2) AT5G58800 226 / 2e-74 Quinone reductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026035 [exp] 399 / 6e-142 AT4G36750 371 / 4e-131 Quinone reductase family protein (.1) Lus10014325 [exp] 392 / 2e-139 AT4G36750 370 / 2e-130 Quinone reductase family protein (.1) Lus10024032 [exp] 267 / 2e-91 AT4G36750 248 / 5e-84 Quinone reductase family protein (.1) Lus10040486 [exp] 264 / 4e-89 AT4G36750 291 / 6e-100 Quinone reductase family protein (.1) Lus10006748 [exp] 254 / 2e-85 AT4G27270 323 / 5e-114 Quinone reductase family protein (.1) Lus10018401 [exp] 253 / 6e-85 AT4G27270 342 / 3e-121 Quinone reductase family protein (.1) Lus10020076 [exp] 248 / 3e-83 AT4G27270 314 / 2e-110 Quinone reductase family protein (.1) Lus10007612 [exp] 244 / 4e-81 AT4G27270 329 / 1e-115 Quinone reductase family protein (.1) Lus10005862 [exp] 228 / 2e-75 AT5G58800 290 / 5e-101 Quinone reductase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029600 [exp] 355 / 8e-125 AT4G36750 362 / 3e-127 Quinone reductase family protein (.1) Potri.005G126200 [exp] 351 / 4e-123 AT4G36750 361 / 4e-127 Quinone reductase family protein (.1) Potri.004G151100 [exp] 314 / 2e-108 AT4G36750 311 / 4e-107 Quinone reductase family protein (.1) Potri.001G410700 [exp] 261 / 2e-88 AT4G27270 345 / 1e-122 Quinone reductase family protein (.1) Potri.011G129400 [exp] 254 / 1e-85 AT4G27270 342 / 2e-121 Quinone reductase family protein (.1) Potri.011G033100 [exp] 253 / 2e-85 AT4G27270 352 / 1e-125 Quinone reductase family protein (.1) Potri.004G028900 [exp] 251 / 1e-84 AT4G27270 352 / 2e-125 Quinone reductase family protein (.1) Potri.009G044400 [exp] 243 / 2e-81 AT5G58800 322 / 3e-113 Quinone reductase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0042 [flax] [poplar] Flavoprotein PF03358 [flax] [poplar] FMN_red NADPH-dependent FMN reductase
Representative CDS sequence Show only first row Show all	>Lus10041718 pacid=23147012 polypeptide=Lus10041718 locus=Lus10041718.g ID=Lus10041718.BGIv1.0 annot-version=v1.0 ATGGGGAAGGGCGGCGGTTGCGTTCCTAGCAAGAAAAAACACTCACTCGTCGCCGATAATCCTCCTCAACCCGCCCCCTCCACGGCCGACGCCACCACCT CCCTTTCACCGGAGCCTTCCGTGGATCTCGCCCCCACGGACAACAATCACCCGACAGCAGCTGAGGCCGGAGTTCGATCCGCCTCCGCCGTGAATTTGAA GGTATTCATAGTGTTCTACTCGATGTATGGCCATGTGGAGTTGTTGGCCAGGAGGATGAAGAAGGGAGTCGACGGAGTAGACGGAGTCGAAGCGGTGCTT TATCGCGTTCCGGAAACGCTCCCGAGCGAAGTTTTGGAGCGGATGAAGGCGCCGCCGAAGGATCCTTCCATTCCGGAGATTATGGCGGCGGCGGAGTTGG TTGAAGCCGATGGCGTCCTGTTTGGGTTCCCGACGAGGTACGGATCTATGGCGGCGCAAATGAAGTCGTTTTTCGACTCCACTGGCCAATTATGGAAGGA GCAGAAGCTCGCCGGGAAACCTGCTGGGTTTTTCGTCAGCACCGGGACTCAAGGCGGCGGTCAAGAAACCACCGCATGGACAGCGATTACGCAATTGGCG CACCATGGTATGCTGTTTGTTCCTGTGGGTTACACATTTGGTGCTGGTATGTTCAACATGGAATCTATCCGGGGAGGATCTCCCTATGGTGCTGGAGTTT ATGCCGGTGATGGTTCGAGGCAGCCAAGCGAGATAGAGTTGGCACTTGCAGAGCACCAGGGCAAGTATATGGCTACTATGGTTAAGAGGATCGCCCATGC TTGA
AA sequence Show only first row Show all	>Lus10041718 pacid=23147012 polypeptide=Lus10041718 locus=Lus10041718.g ID=Lus10041718.BGIv1.0 annot-version=v1.0 MGKGGGCVPSKKKHSLVADNPPQPAPSTADATTSLSPEPSVDLAPTDNNHPTAAEAGVRSASAVNLKVFIVFYSMYGHVELLARRMKKGVDGVDGVEAVL YRVPETLPSEVLERMKAPPKDPSIPEIMAAAELVEADGVLFGFPTRYGSMAAQMKSFFDSTGQLWKEQKLAGKPAGFFVSTGTQGGGQETTAWTAITQLA HHGMLFVPVGYTFGAGMFNMESIRGGSPYGAGVYAGDGSRQPSEIELALAEHQGKYMATMVKRIAHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36750			Quinone reductase family prote...		Lus10041718 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10009859 [exp]	2.4	0.8708
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	4.2	0.8785
AT2G20740			Tetraspanin family protein (.1...		Lus10039817 [exp]	8.1	0.8504
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10019769 [exp]	8.2	0.8472
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039562 [exp]	8.7	0.8371
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10024177 [exp]	11.2	0.8200
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10008227 [exp]	12.6	0.8270
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10013186 [exp]	13.2	0.8281
AT3G14280			unknown protein		Lus10037453 [exp]	17.0	0.8156
AT5G24010			Protein kinase superfamily pro...		Lus10039274 [exp]	18.2	0.7916

Compare expression of checked genes

Lus10041718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.