Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36740 152 / 6e-46 HD HB-5, ATHB40 homeobox protein 40 (.1) AT2G18550 136 / 7e-40 HD HB-2, ATHB21 homeobox-2, homeobox protein 21 (.1) AT5G66700 136 / 1e-39 HD ATHB53, HB53, HB-8 HOMEOBOX-8, ARABIDOPSIS THALIANA HOMEOBOX 53, homeobox 53 (.1) AT3G01470 85 / 1e-19 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT5G03790 79 / 1e-17 HD LMI1, ATHB51 LATE MERISTEM IDENTITY1, homeobox 51 (.1) AT2G36610 77 / 3e-17 HD ATHB22 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22, homeobox protein 22 (.1) AT4G40060 77 / 8e-17 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT2G22430 77 / 1e-16 HD ATHB6 homeobox protein 6 (.1) AT1G69780 77 / 1e-16 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT5G65310 76 / 2e-16 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024031 [exp] 315 / 5e-110 AT4G36740 189 / 2e-60 homeobox protein 40 (.1) Lus10035583 [exp] 85 / 6e-20 AT5G03790 146 / 2e-43 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Lus10022225 [exp] 79 / 3e-17 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036709 [exp] 78 / 5e-17 AT3G01470 139 / 2e-39 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008641 [exp] 78 / 6e-17 AT5G03790 152 / 4e-45 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Lus10037218 [exp] 77 / 8e-17 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10023159 [exp] 76 / 3e-16 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10008795 [exp] 76 / 3e-16 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 76 / 6e-16 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029500 [exp] 155 / 1e-47 AT4G36740 208 / 2e-68 homeobox protein 40 (.1) Potri.005G126100 [exp] 153 / 1e-46 AT2G18550 201 / 2e-65 homeobox-2, homeobox protein 21 (.1) Potri.002G100600 [exp] 83 / 5e-19 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.005G071900 [exp] 79 / 2e-17 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.006G117700 [exp] 78 / 2e-17 AT5G03790 181 / 5e-57 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Potri.007G097100 [exp] 79 / 3e-17 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.015G065400 [exp] 76 / 2e-16 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 76 / 3e-16 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.008G194400 [exp] 75 / 9e-16 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.012G023700 [exp] 74 / 9e-16 AT2G46680 147 / 4e-43 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10041719 pacid=23146812 polypeptide=Lus10041719 locus=Lus10041719.g ID=Lus10041719.BGIv1.0 annot-version=v1.0 ATGGACGACTTCTCCTGCAACACCCTCATCTATCCCGCCGCCGTTTATGATCCACAACCACTACTCCTCCCTCCTCACCAAGAAGGAGAGGAGCCAAATC AGAAAGCAGCCGGAAGGAGGAGGAGAAGGAAGAAGAAGGATCAATCCAACGGTGGAGAAGGCTCCATCTTGAAGAAGAGAAAGCTCACCGACGAGCAAGT CACCTTACTTGAACTTAACTTCGGAAATGAGCACAAATTGGAGTCCGAGCGTAAAGACAGGCTCGCTGCTGAGCTCGGACTCGACCCTCGCCAGGTTGCA GTTTGGTTCCAAAACCGCCGTGCCCGTTGGAAAACCAAGAAGCTCGAAGAAGAATACTCCAAGTTGAAATCCTCCCATGACCTTATTACCCTCCATAAAT GCCGTCTCGAATCTGAGGTATTGCAGCTGAAAGAGCAGCTGTCGGAGGCAGAGAAGGAGATTCAACGACTGTCGATAACGGAGCGTTCGGCTGACGTGGC CTCGAGCAACAGCCCGAGCTCTTCGCTAACGACGATGGATCCGCAGCAGCAATTTTTCGGCGGAGGGGGAGGATTCGGAGTGGTTGAAGATCAGTATCAA GATGTGTTCTACAGCATGCCGGAGAGTGCATATGTTGCCAATGGGATGGAGTGGGTGTACATGTAA
AA sequence Show only first row Show all	>Lus10041719 pacid=23146812 polypeptide=Lus10041719 locus=Lus10041719.g ID=Lus10041719.BGIv1.0 annot-version=v1.0 MDDFSCNTLIYPAAVYDPQPLLLPPHQEGEEPNQKAAGRRRRRKKKDQSNGGEGSILKKRKLTDEQVTLLELNFGNEHKLESERKDRLAAELGLDPRQVA VWFQNRRARWKTKKLEEEYSKLKSSHDLITLHKCRLESEVLQLKEQLSEAEKEIQRLSITERSADVASSNSPSSSLTTMDPQQQFFGGGGGFGVVEDQYQ DVFYSMPESAYVANGMEWVYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	0	1
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	1.7	0.9628
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Lus10004922 [exp]	2.8	0.9345
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	4.0	0.9527
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	4.2	0.9514
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10012593 [exp]	4.9	0.9202
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	6.0	0.9440
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029626 [exp]	7.2	0.9292
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10016998 [exp]	7.5	0.9363
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10019319 [exp]	8.0	0.9255
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	8.8	0.9406

Compare expression of checked genes

Lus10041719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.