Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36730 199 / 1e-61 bZIP GBF1 G-box binding factor 1 (.1.2) AT2G35530 122 / 2e-31 bZIP AtbZIP16 basic region/leucine zipper transcription factor 16 (.1) AT1G32150 112 / 8e-28 bZIP AtbZIP68 basic region/leucine zipper transcription factor 68 (.1) AT2G46270 97 / 1e-22 bZIP GBF3 G-box binding factor 3 (.1.2) AT4G01120 89 / 1e-19 bZIP ATBZIP54, GBF2 BASIC REGION/LEUCINE ZIPPER MOTIF 5, G-box binding factor 2 (.1) AT2G18160 56 / 4e-09 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT5G60830 55 / 9e-09 bZIP ATBZIP70 basic leucine-zipper 70 (.1) AT3G49760 52 / 5e-08 bZIP ATBZIP5 basic leucine-zipper 5 (.1) AT1G75390 52 / 8e-08 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT3G30530 51 / 2e-07 bZIP ATBZIP42 basic leucine-zipper 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024030 [exp] 488 / 9e-175 AT4G36730 267 / 3e-88 G-box binding factor 1 (.1.2) Lus10014324 [exp] 376 / 1e-130 AT4G36730 291 / 2e-97 G-box binding factor 1 (.1.2) Lus10026033 [exp] 341 / 4e-116 AT4G36730 273 / 4e-90 G-box binding factor 1 (.1.2) Lus10005146 [exp] 89 / 2e-19 AT2G46270 340 / 1e-113 G-box binding factor 3 (.1.2) Lus10003034 [exp] 87 / 8e-19 AT2G46270 333 / 3e-111 G-box binding factor 3 (.1.2) Lus10029101 [exp] 53 / 5e-08 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10011722 [exp] 52 / 1e-07 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10013059 [exp] 50 / 4e-07 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10002399 [exp] 49 / 3e-06 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029400 [exp] 300 / 2e-100 AT4G36730 302 / 1e-101 G-box binding factor 1 (.1.2) Potri.005G126000 [exp] 291 / 7e-97 AT4G36730 322 / 2e-109 G-box binding factor 1 (.1.2) Potri.003G097600 [exp] 135 / 2e-36 AT2G35530 447 / 1e-156 basic region/leucine zipper transcription factor 16 (.1) Potri.001G136000 [exp] 123 / 5e-32 AT2G35530 424 / 3e-147 basic region/leucine zipper transcription factor 16 (.1) Potri.014G094200 [exp] 103 / 1e-24 AT2G46270 340 / 2e-114 G-box binding factor 3 (.1.2) Potri.002G167100 [exp] 102 / 4e-24 AT2G46270 355 / 1e-120 G-box binding factor 3 (.1.2) Potri.014G007100 [exp] 55 / 1e-08 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1) Potri.015G047700 [exp] 54 / 2e-08 AT5G60830 86 / 8e-21 basic leucine-zipper 70 (.1) Potri.007G006900 [exp] 54 / 2e-08 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.004G111100 [exp] 50 / 4e-07 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor CL0018 [flax] [poplar] PF07777 [flax] [poplar] MFMR G-box binding protein MFMR
Representative CDS sequence Show only first row Show all	>Lus10041720 pacid=23146713 polypeptide=Lus10041720 locus=Lus10041720.g ID=Lus10041720.BGIv1.0 annot-version=v1.0 ATGGGAGCAGGTGAAGAGAGCTCACCTACAAAGCCATCTAAAGCAGCAGCTTCTTCTACTCAGGAAGTTCCATCAACACCCGCTTATCCCGAGTGGCCAG GTCCCATGCAGGTTTATTATGGTGCTGGAGCCACTCCACCTTATTATCCTTCAACTGTCGCTTCACCCCACCCTTACGTATATCACCAACATCCGTTTGT GCCACATTATGGAACCCCAGTTCCATACCCAGCTATGTATCCTCCTGGGGGTGTGTATCCTCATCCTAGTATGGCCATGACACCAAACTCAGTAGCACCA AGCATGGACATGGAGGGAAAGGGGACCAATGGCAAAGATCAGTCTTCCTCCAAGAAGTCCAAGAGAACACCTGCAAAGAAAGCTGGAGAGAGTGGAAAAT CAGGTTCAGGGAATGATGCTGTCTCCCATAGTGGTGAAAGTGGTAGTGATGGCGGCTCATCAGATGCTAGCGATGAACAGGATTATAATGCGAGTAAGAA GGGGAGTTTCAACCAGATGCTTGCAGAAGCGAGTGCCCAAGGTGCTGTTCCTATTGCGTCTGTTCCTGGAACCAAACTAAATATTGGGATAGAATTATGG AATGCCTCTCCAGCTTCTGCAGGGACTGGACCTGCAAAATTGAGGACAAACCCCCCTGGTGGCTCATCTGCAATTGTTCCTGTTCCTGGAGCGATGCCAG AACCATGGCTTCAGGATGAAAGGGAACTTAAAAGACAAAAGAGAAAGCAATCGAACCGGGAGTCAGCTAGAAGATCTCGATTACGCAAGCAGGCTGAATG CGAAGAGCTACAACACAGAGTACAAAACTTAACCAGAGACAATCAGACTCTTAAAAATGATGTGTTGAAACTTTCGGAGGAGTGCGAGAAGCTGAAAGCT GAGAACGAGTCCATCAAGAAGAAATTGGAGGAATCATACGGGCCAGAAGCAGTAGAACAACTTGAAGAAAACAAGGAGACTTCGCCGCGGGCTGATGAAG GGAATAGTTGA
AA sequence Show only first row Show all	>Lus10041720 pacid=23146713 polypeptide=Lus10041720 locus=Lus10041720.g ID=Lus10041720.BGIv1.0 annot-version=v1.0 MGAGEESSPTKPSKAAASSTQEVPSTPAYPEWPGPMQVYYGAGATPPYYPSTVASPHPYVYHQHPFVPHYGTPVPYPAMYPPGGVYPHPSMAMTPNSVAP SMDMEGKGTNGKDQSSSKKSKRTPAKKAGESGKSGSGNDAVSHSGESGSDGGSSDASDEQDYNASKKGSFNQMLAEASAQGAVPIASVPGTKLNIGIELW NASPASAGTGPAKLRTNPPGGSSAIVPVPGAMPEPWLQDERELKRQKRKQSNRESARRSRLRKQAECEELQHRVQNLTRDNQTLKNDVLKLSEECEKLKA ENESIKKKLEESYGPEAVEQLEENKETSPRADEGNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10041720 [exp]	0	1
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Lus10009335 [exp]	2.6	0.8443
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004596 [exp]	5.4	0.8946
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Lus10027321 [exp]	8.5	0.8503
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10000947 [exp]	8.9	0.8283
AT4G30310			FGGY family of carbohydrate ki...		Lus10001312 [exp]	13.1	0.8328
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10010629 [exp]	13.9	0.8071
AT2G37840			Protein kinase superfamily pro...		Lus10022593 [exp]	17.8	0.8466
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10033969 [exp]	21.4	0.8462
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Lus10004392 [exp]	22.5	0.8222
AT5G09960			unknown protein		Lus10006803 [exp]	24.2	0.8531

Compare expression of checked genes

Lus10041720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.