Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18540 355 / 3e-112 RmlC-like cupins superfamily protein (.1) AT4G36700 338 / 4e-108 RmlC-like cupins superfamily protein (.1) AT2G28490 176 / 1e-47 RmlC-like cupins superfamily protein (.1) AT3G22640 75 / 9e-14 PAP85 cupin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037937 [exp] 752 / 0 AT2G18540 400 / 2e-131 RmlC-like cupins superfamily protein (.1) Lus10006420 [exp] 176 / 1e-47 AT2G28490 471 / 2e-163 RmlC-like cupins superfamily protein (.1) Lus10011364 [exp] 175 / 1e-47 AT2G28490 466 / 2e-161 RmlC-like cupins superfamily protein (.1) Lus10042615 [exp] 96 / 2e-20 AT3G22640 201 / 3e-58 cupin family protein (.1) Lus10042617 [exp] 82 / 5e-16 AT3G22640 202 / 2e-58 cupin family protein (.1) Lus10022070 [exp] 81 / 9e-16 AT3G22640 205 / 8e-60 cupin family protein (.1) Lus10022072 [exp] 50 / 2e-06 AT3G22640 114 / 4e-29 cupin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029100 [exp] 491 / 1e-164 AT2G18540 391 / 2e-126 RmlC-like cupins superfamily protein (.1) Potri.009G054700 [exp] 188 / 3e-52 AT2G28490 522 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.006G002500 [exp] 69 / 5e-12 AT3G22640 174 / 7e-49 cupin family protein (.1) Potri.005G212333 [exp] 52 / 4e-07 AT3G22640 76 / 2e-15 cupin family protein (.1) Potri.001G259208 [exp] 0 / 1 AT2G28490 0 / 1 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10041722 pacid=23146895 polypeptide=Lus10041722 locus=Lus10041722.g ID=Lus10041722.BGIv1.0 annot-version=v1.0 ATGGTGAAAGAATCAGGATGGATTACGGTCACGGTTTCATCGATCTTACTGCTACTGCTCTACTCTGCTACGGCGGCGGCAGCCATTGGCGATGAAGAGA AGCTCCCAGCAGTTGTGAGGAGAGATGAGAGGAAGCAGGTAATGGTGACAGAGTACGGTCAGGTATCGTCGGTTGACGTCATCACCGCAACGAGAGGTCC CTTCCACGTGGAGTTCATCACATTGAACCCCAACTCATTGTTCCTCCCTGTTCTCCTCCACTCCGACATGGTCTTCTACGTTCACACAGGAAGCGGGAAG TTGAGTTGGGGAGATGGCGATGAAATCAAGAGAGTGGATTTGCGGAGAGGAGATGTGTACAGGTTGGAGGCTGGCTCTGTTTTCTTTCTACAGAGTAATT TGGATGCTGTCCGCCAGAATCTTAGGGTTCATGCCATTTTCACCACTACAGATGAAGACATTTGGGAGCCGTCAATTGGAGCATACTCCAGCATTTCGGA TCTTGTCCTGGGATTCGACGACAAGCTTCTCCAATCCGCCTTCTCGGTCTCGGAAGAGATGATCGATGAAATAACCAGCGCGCCGAAACCACAAGGGATA GTTCACGTCGTAACACCACCACAGTCAGATGATAAGAAGAAGAGATCGGTATTCTATGAATTGGAGAACCGTTTTCTCAAGGTGCTCGCTGCTGGAGAAG GTGGTGGGTCCTTCGATGTGAAAAACAAGAAGAAATCGGAGACGTTCAACGTTTTCGACTCCGACCCGGATTTCCAGAACTGCCATGGCTGGAGCCTTAC TGTTGATAAAGGCAACTTCAAGACCCTCAAAGGTTCCCACATTAGTGTCTTCATGGTCAACTTGACCAAGGGAGCGATGATGGGGCCTCATTGGAACCCG ATGGCAACGGAAGTAGGAGTGGTCCTCGAAGGGGAAGGAATGGTGCGAGTGGTTTGCTCATCGAACTCGACAGGGCGGTGCAAGAACAAGAGGTTTATGG TGGGTCCAGGGGACGTGTTTGTAGTGCCGAGGTTTCATCCAATGGCGCAAATGTCATTCAACAATGCTTCGTTCGTGTTTATGGGGTTCAGCACCTCGGC GAAGAAGAACCACCCGCAGTTCCTGGCCGGGAAGAGGTCGGTCCTCCGGACGCTGGACAAGGATGTGTTGGCTCTGTCTTTCAATGCCAGCAACACCACG ATCGATCATTTGTTGGGCGCTCAGGACGAAGCGATTATATTGGAGTGTGTTTCTTGTGCGGAGGCGGAGTTGGAGTTGATGAAGGAAGAGATTGAGAGGG AGAGGAGGGAGGAAGAAGAGAGGAGAAGGAAAGAGGAGGAAGAAGAGAGGAGAAGGAAAGAGGAGGAAGAAGAGAGGAAGAGGGAAGAAGAGGAAGAGAG GAGGAGAAAGGAAGAGGAAGAAAGGGAGAGGAAAGAAGAGGAGGCGAGGAGAGAGCAAGAAGAGGCTGGAAAGGAAGAGGAAGAGAGGAAGAGGAAAAGG GAAGAAGAAGAGGAAATGAAGAGAAAGGAAGAAGAAGAGAGGGAAAGGAAAGAGGAGGCGGCGAAGAGGGAGCAAGAAGAAGCTAGAAAGGAGGAGGAAG AAAGGCAGAGGAAGAGGGAGGAGGAAGAAGAAATGAAGAGGAAGGAAGAAGAGGAAATGGAGAAGAAAGAAGAGGAGGCGAGTAGGGAGCAAGAAGAGGC TAGAGAGGCAGAGAAAGAGAGACAAAGGAAGAGGGAGGAGGAAGAGGAAATGAAGAGGAAGGAAGAAGAAGAAAGGGAGAAGAAAGAAGAGAAGGCGGAG ACGGAGCAAGAAGAGGCTAGAAAGGAGGAGGAAGAGAGGAAGAGGAAGAGGGAAGAAGAAGAAGAAGTAGAGAAGAAAGAGGAGGAAGCAAGTAGGGAGC AGGAAGAGGCTAGAGAGGCAGAGGAAGAGAGACAGAGGAAGAGGGAAGCAGAGGCGGAAGAGGAAAGTCGAAGAAGAGAAGAGGCTAGAGAGGCAGAGGA GGAAGCACGGCAAGAGCGAGAAGAGGCAGCGATGAGGGAGCAAGAAGAAGCAAGGCGTCAGCAAAAGAGGCGGGAGAGGGAAGAGCCAGCTGAAGGTGGT GGTGGTGGTAGTGAAGCAAGAGGGATATTTAGAAGCCCTTGGGGACTTTGGATGTGA
AA sequence Show only first row Show all	>Lus10041722 pacid=23146895 polypeptide=Lus10041722 locus=Lus10041722.g ID=Lus10041722.BGIv1.0 annot-version=v1.0 MVKESGWITVTVSSILLLLLYSATAAAAIGDEEKLPAVVRRDERKQVMVTEYGQVSSVDVITATRGPFHVEFITLNPNSLFLPVLLHSDMVFYVHTGSGK LSWGDGDEIKRVDLRRGDVYRLEAGSVFFLQSNLDAVRQNLRVHAIFTTTDEDIWEPSIGAYSSISDLVLGFDDKLLQSAFSVSEEMIDEITSAPKPQGI VHVVTPPQSDDKKKRSVFYELENRFLKVLAAGEGGGSFDVKNKKKSETFNVFDSDPDFQNCHGWSLTVDKGNFKTLKGSHISVFMVNLTKGAMMGPHWNP MATEVGVVLEGEGMVRVVCSSNSTGRCKNKRFMVGPGDVFVVPRFHPMAQMSFNNASFVFMGFSTSAKKNHPQFLAGKRSVLRTLDKDVLALSFNASNTT IDHLLGAQDEAIILECVSCAEAELELMKEEIERERREEEERRRKEEEEERRRKEEEEERKREEEEERRRKEEEERERKEEEARREQEEAGKEEEERKRKR EEEEEMKRKEEEERERKEEAAKREQEEARKEEEERQRKREEEEEMKRKEEEEMEKKEEEASREQEEAREAEKERQRKREEEEEMKRKEEEEREKKEEKAE TEQEEARKEEEERKRKREEEEEVEKKEEEASREQEEAREAEEERQRKREAEAEEESRRREEAREAEEEARQEREEAAMREQEEARRQQKRREREEPAEGG GGGSEARGIFRSPWGLWM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18540			RmlC-like cupins superfamily p...		Lus10041722 [exp]	0	1
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001418 [exp]	3.6	0.8337
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10001652 [exp]	6.7	0.8089
AT3G55390			Uncharacterised protein family...		Lus10001709 [exp]	7.2	0.8201
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10016939 [exp]	9.4	0.7696
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10034716 [exp]	13.7	0.8173
AT1G61600			Protein of unknown function (D...		Lus10035379 [exp]	14.6	0.8258
					Lus10025225 [exp]	15.7	0.8317
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021648 [exp]	16.5	0.7982
AT4G15960			alpha/beta-Hydrolases superfam...		Lus10038649 [exp]	23.5	0.8005
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039701 [exp]	24.3	0.8199

Compare expression of checked genes

Lus10041722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.