Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66730 317 / 1e-102 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G50700 315 / 2e-102 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT4G02670 301 / 1e-97 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT1G55110 301 / 6e-97 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT1G03840 301 / 2e-96 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT3G45260 298 / 4e-96 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G03150 298 / 5e-95 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT3G13810 296 / 1e-94 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT5G44160 295 / 2e-94 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT2G02080 286 / 1e-90 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010820 [exp] 304 / 2e-100 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 303 / 9e-97 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 296 / 8e-95 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 296 / 8e-95 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10008396 [exp] 296 / 2e-93 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10004840 [exp] 289 / 4e-91 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10004497 [exp] 285 / 3e-90 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10029904 [exp] 283 / 7e-90 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10041356 [exp] 288 / 3e-87 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028800 [exp] 328 / 2e-106 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.005G125600 [exp] 314 / 4e-101 AT5G66730 429 / 4e-146 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.017G017100 [exp] 306 / 1e-98 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.006G129300 [exp] 304 / 2e-97 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.007G135000 [exp] 302 / 4e-97 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.016G088500 [exp] 301 / 2e-96 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.003G036900 [exp] 302 / 3e-96 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.002G048000 [exp] 299 / 5e-96 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.002G263600 [exp] 296 / 1e-94 AT3G50700 337 / 4e-111 indeterminate(ID)-domain 2 (.1) Potri.013G019200 [exp] 296 / 3e-94 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041723 pacid=23146765 polypeptide=Lus10041723 locus=Lus10041723.g ID=Lus10041723.BGIv1.0 annot-version=v1.0 ATGCCCGTCGATTTGGATAACACTTCCACCGCTTCAGGAGAAGCCAGCGGCTCTTTCTCTGGGGGCGGCTGCGGAACTAACCCCCCATCTCATTCTCAGC CGCCGCCGCCTCAATCATCCACCCCCAAGAAGAAGCGCAACCTCCCCGGGATGCCAGATCCGGATGCTGAAGTGATCGCGCTGTCGCCCAAGACGCTAAT GGCGACTAACCGATTCATCTGCGAAATCTGCAACAAGGGGTTTCAGCGAGACCAGAACTTGCAGCTTCACAGGAGAGGACACAATCTTCCATGGAAGCTG AGGCAGAGATCTAGTAAAGACGCAGTGAAGAAGAGGGTTTACGTCTGCCCCGAATCGACCTGCGTCCACCACGATCCGTCTCGAGCTCTCGGGGATCTCA CCGGGATAAAGAAGCACTTCTGCAGGAAGCACGGAGAGAAGAAGTGGAAGTGCGACAAGTGTTCCAAGAAATACGCCGTCCAGTCCGATTGGAAGGCTCA CTCCAAGATTTGCGGCACCCGCGAGTACAAATGCGATTGTGGAACCATGTTTTCAAGGAGGGATAGCTTTATCACCCACAGAGCATTCTGCGACGCCTTG GCAGAGGAAAGTGCCAGAGCTCATCCAAACCGGAACCCGACTCCAATTCTGGACTCGAATCGGAGCCCTGATTTGGAGCCGAACGCTCATGTTGATTCAG CTGCTTCACCTCCAGTGCCGTCTTCGACGGTGTCGCCGATTCATAGTCCAGAGTTTCCGGAAAGTCGAGATCCAGCTCCAGTCATGGAAGAGCCACCGGC TCTGGTGCCGCCATCTGTCCCGGTGACCGGAGCCCCGCCCGTGACAGTGAATGGAAGCTGTAGCAGTAGCTCAAGCAGCAATGGAAGCACTAGCAGCACC GTCTTCGCTAGTTTGTTTGCTTCCTCCACTACTGCAGCCACCTTCCAGCAGCCCCCTCCTCAGACTCAATCATTCACCAACCTAATTCGAGCAATGGCTG TGCGCACTGAACACCTTGCTCCACCGCCACTACCTTCATCAGCCTATACTGAACCGATTTCGCTATGTCTCTCCACCAGCCACGGTTCGTCGATATTTGG CGTCCCTGCGCCGCCTCAACCAGCTGCCATGTCAGCGACCGCATTACTTCAGAAAGCTGCCCAGATGGGAGCTGCTGCGACGAATGCATCCTTGCTCCGC GGTTTGGGGGTAGTATCGTCATCTTCGTCGCCCCATGATAGTTGGGGTCAGAGGCAAGTAATGGAGCCAGAGAATTCCTCGGTTCATCCGGGACTTGGAC TTGGATTATTCCCTTGCGATGGAGGTTCGGGATTAAAGGAACTGATGATGGGAACTCCGTCGATGTTTGGACCTAAGCACCCTACGCTCGACTTCCTCGG ACTTGGAATGGCTGCTGGTGGCAGCCCGAGTGGCGGTCTATCGGCATTAATCACGTCGATTGGCGGTGGACTTGACGTAGGTAGTTCATTTGGTGGCGGG AATTCGGCGGCTGAGACATCGGTAGTAGGTCATGATGTTTGTAGTGAGTATCCTAAATGA
AA sequence Show only first row Show all	>Lus10041723 pacid=23146765 polypeptide=Lus10041723 locus=Lus10041723.g ID=Lus10041723.BGIv1.0 annot-version=v1.0 MPVDLDNTSTASGEASGSFSGGGCGTNPPSHSQPPPPQSSTPKKKRNLPGMPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKL RQRSSKDAVKKRVYVCPESTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTMFSRRDSFITHRAFCDAL AEESARAHPNRNPTPILDSNRSPDLEPNAHVDSAASPPVPSSTVSPIHSPEFPESRDPAPVMEEPPALVPPSVPVTGAPPVTVNGSCSSSSSSNGSTSST VFASLFASSTTAATFQQPPPQTQSFTNLIRAMAVRTEHLAPPPLPSSAYTEPISLCLSTSHGSSIFGVPAPPQPAAMSATALLQKAAQMGAAATNASLLR GLGVVSSSSSPHDSWGQRQVMEPENSSVHPGLGLGLFPCDGGSGLKELMMGTPSMFGPKHPTLDFLGLGMAAGGSPSGGLSALITSIGGGLDVGSSFGGG NSAAETSVVGHDVCSEYPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Lus10041723 [exp]	0	1
AT5G10080			Eukaryotic aspartyl protease f...		Lus10016434 [exp]	1.4	0.7653
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10036132 [exp]	6.0	0.7879
					Lus10006886 [exp]	6.0	0.7483
AT3G15630			unknown protein		Lus10033048 [exp]	8.5	0.7116
AT1G49230			RING/U-box superfamily protein...		Lus10006787 [exp]	11.7	0.7596
AT3G11590			unknown protein		Lus10017001 [exp]	14.2	0.7609
AT2G30933			Carbohydrate-binding X8 domain...		Lus10031443 [exp]	20.2	0.7121
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10018467 [exp]	21.8	0.6764
AT1G63850			BTB/POZ domain-containing prot...		Lus10023573 [exp]	25.3	0.7004
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	25.9	0.7484

Compare expression of checked genes

Lus10041723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.