Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49530 225 / 1e-65 SIN-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037936 [exp] 667 / 0 AT5G49530 344 / 3e-109 SIN-like family protein (.1) Lus10024027 [exp] 94 / 1e-21 AT5G49530 78 / 2e-16 SIN-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028600 [exp] 402 / 2e-133 AT5G49530 503 / 2e-170 SIN-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0662 [flax] [poplar] Triple_barrel PF04801 [flax] [poplar] Sin_N Sin-like protein conserved region
Representative CDS sequence Show only first row Show all	>Lus10041724 pacid=23146613 polypeptide=Lus10041724 locus=Lus10041724.g ID=Lus10041724.BGIv1.0 annot-version=v1.0 ATGGAAGTTGATGCAACAAAGGAGGCGGGAGATGAGGATGATCACATGGATATTGACAAAGGAGAAGAAGTTGTAGGAGAAGAGGATGTAATTGTTCGCG AGATTGAAGTCTTCTTCACTCCTTCGGTTGATCCCGAGACTCCGTTATATGTTCTGCAATATCCTCTGAGACCTCGCTGGACACCATATGAACTTGATGA ACGTTGTGAGGAGGTTAGACTGAAACCTTCAACTGATGACGTGGAGGTTGATTTATCCATTGACGATACGATGAATTTTGATGCAAATTATGCAACTTTG TCATCTGTGTGGGCACCTCCCAGTTCACGTGCCGGCTATGCTGTTGGGGCTGTGATTGGTAATAAGTTGCATTTGAATCCTGTCAAGGCAGTGGTGCAAC TTCGACCTTCTTTGAAAAACTATGAATCATTTGATTCAAACCTGAAGATCGATACCGAGAGTGATACAGATGTCACTATTAAACAAGAAGGTTCTACTCA GGCGAAACGTGCTAGTTCATCAAAAAAGCAGCAGACAGGTACTGTAAATGGACAAGCTACGGATGCTGAAGGGTCTTGGGTCCCACTAAAGTACCATAGC TCGAAGAGTGACATCTCTTCTGCATATCTCGAGAAAATGGTCACACAAGATCTTTCTCCTATAGAGTTTACAATGAGCCCGTATGACTATATGAGTTCAA TGTGTCTTGGAGCATCCAACAGCAGCGATAGGCGTAAAGGTCCATCAAGAAGGCTTCTGCTTTCATTGCCATTGAAAAATGCGCATAGAGAAATTGTTTC TTGGGGTATGTTTGAACGCAGCATACTTGGACCCTCAGTTCAGAAGTTTGTTGCCGTCAAGCATTTTGCTCCTGACAGCTCGAGTGAGGAGCTCTTAGAA GTCCTTGGAGAGTATGGGCAATTAGTGCAGGGACTTTGGGCTGCAAAAACTTCTTTGCTGATCCCTCCAAGTGATGGACAGAAACACGTGGCTAGAGATT ATATATTTGCTGTCGAACGACCTTCGTTGCGGGATTGGAAGTTTAAGGAGCAAACAGACTGGTCTTTTATGAAACAGTCCCAACATGTCGTTGAAAGGTC CAAGAAAACTTACGAAAGCGTGGATAAAAGTCTTGAGGAGGTGCTCAAGAAAATGCTCAAGGTGTGGCCTGGCGGCAGGAACTTAGCAAAGCCAAATGTG CCAAAGAACCCTGCAAAACCTCTAGAAATAGCAAGGGCAACCGCAGCGGCTGCCGATGGTCCCCCAGAGGAGCTAGAGGAAGTGATAAATGAACTTGCCC CCAAGGTTCATGGATTCTCTATTTTGAACTCATCTCCTGACCATCCGGAACACGACTCAATAAGGAAAATTGTCATTAAACTTCTCATAGGTAAGGGGCC TGATGCGAAGCTAAAGAGGGCTGAAATCAAAGAAGCAGTTCTCTTTGAGCTGGAAAGAGAAATGACCAACCCCGAACACAAGGTAGTTGCAGATATTTGC GAATCAAAAGCTTCAGCCTGGGTGTTGAAAAGTGGAGATGGGAAGCCAACATGA
AA sequence Show only first row Show all	>Lus10041724 pacid=23146613 polypeptide=Lus10041724 locus=Lus10041724.g ID=Lus10041724.BGIv1.0 annot-version=v1.0 MEVDATKEAGDEDDHMDIDKGEEVVGEEDVIVREIEVFFTPSVDPETPLYVLQYPLRPRWTPYELDERCEEVRLKPSTDDVEVDLSIDDTMNFDANYATL SSVWAPPSSRAGYAVGAVIGNKLHLNPVKAVVQLRPSLKNYESFDSNLKIDTESDTDVTIKQEGSTQAKRASSSKKQQTGTVNGQATDAEGSWVPLKYHS SKSDISSAYLEKMVTQDLSPIEFTMSPYDYMSSMCLGASNSSDRRKGPSRRLLLSLPLKNAHREIVSWGMFERSILGPSVQKFVAVKHFAPDSSSEELLE VLGEYGQLVQGLWAAKTSLLIPPSDGQKHVARDYIFAVERPSLRDWKFKEQTDWSFMKQSQHVVERSKKTYESVDKSLEEVLKKMLKVWPGGRNLAKPNV PKNPAKPLEIARATAAAADGPPEELEEVINELAPKVHGFSILNSSPDHPEHDSIRKIVIKLLIGKGPDAKLKRAEIKEAVLFELEREMTNPEHKVVADIC ESKASAWVLKSGDGKPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49530			SIN-like family protein (.1)		Lus10041724 [exp]	0	1
AT4G11670			Protein of unknown function (D...		Lus10029581 [exp]	1.4	0.8943
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10022393 [exp]	8.1	0.8395
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10042890 [exp]	12.2	0.8704
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10033083 [exp]	13.0	0.8689
					Lus10010883 [exp]	14.7	0.8653
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10025061 [exp]	15.1	0.7936
AT5G25360			unknown protein		Lus10005466 [exp]	15.4	0.7924
AT3G52905			Polynucleotidyl transferase, r...		Lus10008532 [exp]	17.7	0.8476
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10001239 [exp]	19.0	0.8679
AT2G28130			unknown protein		Lus10021421 [exp]	19.1	0.8100

Compare expression of checked genes

Lus10041724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.